| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.150180.1 |
| Family | GH28 |
| Protein Properties | Length: 332 Molecular Weight: 35098 Isoelectric Point: 7.4584 |
| Chromosome | Chromosome/Scaffold: 01110 Start: 1120788 End: 1122059 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 20 | 318 | 0 |
| INAIFIRIDGTLVAPSDFQVIGNSAAWVVFRHVDGVTISGGNLDGKGAGLWTCKNSSISTTCPSGATTLQFSNSKNVVVSALTSLNSQMFHIVIHGCQNV MMKGLKVLASGNSPNTDGIHVQMSTDVAILNSKIGTGDDCISIGPGTSNLHIENIICGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQNGVRIKAWG KPSNGFARNILFQHIVMDNVQNPIVIDQNYCPSHKGCPEKASGVKINDVTYQDIHGTSATKVAVKFDCSPINPCVRIKLDNVKLTYMNQTAQATCNNVG | |||
| Full Sequence |
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| Protein Sequence Length: 332 Download |
| MSHEEDITFA LELSTDLAKI NAIFIRIDGT LVAPSDFQVI GNSAAWVVFR HVDGVTISGG 60 NLDGKGAGLW TCKNSSISTT CPSGATTLQF SNSKNVVVSA LTSLNSQMFH IVIHGCQNVM 120 MKGLKVLASG NSPNTDGIHV QMSTDVAILN SKIGTGDDCI SIGPGTSNLH IENIICGPGH 180 GISIGSLAKD LQEDGVQNVT VKNVVFSRTQ NGVRIKAWGK PSNGFARNIL FQHIVMDNVQ 240 NPIVIDQNYC PSHKGCPEKA SGVKINDVTY QDIHGTSATK VAVKFDCSPI NPCVRIKLDN 300 VKLTYMNQTA QATCNNVGGI AAGLVQPTSC F* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-71 | 25 | 327 | 308 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-78 | 25 | 331 | 313 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-78 | 21 | 317 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-86 | 29 | 330 | 306 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-116 | 23 | 331 | 310 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC22689.1 | 0 | 19 | 331 | 88 | 398 | polygalacturonase [Pyrus communis] |
| DDBJ | BAF42034.1 | 0 | 19 | 331 | 88 | 398 | polygalacturonase3 [Pyrus communis] |
| EMBL | CAH18935.1 | 0 | 19 | 331 | 88 | 398 | polygalacturonase [Pyrus communis] |
| RefSeq | XP_002331621.1 | 0 | 19 | 331 | 86 | 396 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 19 | 331 | 83 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-21 | 88 | 304 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.000000000001 | 55 | 285 | 71 | 313 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.000000000002 | 59 | 283 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000002 | 59 | 283 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000002 | 59 | 283 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JZ191937 | 301 | 31 | 331 | 0 |
| JZ194028 | 291 | 24 | 314 | 0 |
| JZ192826 | 286 | 29 | 314 | 0 |
| JZ192324 | 277 | 32 | 308 | 0 |
| JZ195837 | 275 | 26 | 300 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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