| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.158450.1 |
| Family | GH28 |
| Protein Properties | Length: 399 Molecular Weight: 44342.3 Isoelectric Point: 7.6684 |
| Chromosome | Chromosome/Scaffold: 01142 Start: 580867 End: 583828 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 392 | 0 |
| SSNSKTSPIMLVPPGKSFLLQPFTLDGYDCKSTKTNIISIVIDGELIAPKDRWAWKYEGKQCRQWILLKHMKGLVVKGSGTINAQGNTWWDLCTNEEKVC TRRPTSLILEDSEKVHIKNIAFKDSPQMHMAIENSKYVFVKNLYIEAPGDSPNTDGIHIQHSRKISITSSSIRTGDDCISIGDGSYRINISKIACGPGHG ISIGSLGKHGNHEKVEFIHVKDVTFTDTTNGVRIKTWQGGSGYARNIIFEGIVSRGSLNPIIIDQFYCDHEKCKNQTSAVKVSNVLYNRVSGTSKSKIAV NLACSETEPCRNILMKDIKLKSIIEDEEEEDITSSYCKNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| MELFFLILII SLQFLQINSS SKTFNVLDYG AVGDGNTEDT QAFLDAWKAA CKSSNSKTSP 60 IMLVPPGKSF LLQPFTLDGY DCKSTKTNII SIVIDGELIA PKDRWAWKYE GKQCRQWILL 120 KHMKGLVVKG SGTINAQGNT WWDLCTNEEK VCTRRPTSLI LEDSEKVHIK NIAFKDSPQM 180 HMAIENSKYV FVKNLYIEAP GDSPNTDGIH IQHSRKISIT SSSIRTGDDC ISIGDGSYRI 240 NISKIACGPG HGISIGSLGK HGNHEKVEFI HVKDVTFTDT TNGVRIKTWQ GGSGYARNII 300 FEGIVSRGSL NPIIIDQFYC DHEKCKNQTS AVKVSNVLYN RVSGTSKSKI AVNLACSETE 360 PCRNILMKDI KLKSIIEDEE EEDITSSYCK NVVDGHKDX 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-81 | 23 | 367 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-85 | 22 | 367 | 347 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-87 | 24 | 367 | 347 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-92 | 23 | 367 | 349 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-105 | 22 | 367 | 349 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 0 | 4 | 382 | 10 | 370 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15274.1 | 0 | 23 | 396 | 25 | 369 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267133.1 | 0 | 23 | 396 | 25 | 378 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267182.1 | 0 | 1 | 392 | 5 | 379 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321662.1 | 0 | 11 | 396 | 13 | 340 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-21 | 111 | 374 | 96 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-17 | 134 | 345 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-17 | 134 | 345 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-17 | 134 | 345 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-17 | 134 | 345 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
