Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.160470.1 |
Family | PL4 |
Protein Properties | Length: 642 Molecular Weight: 72064.7 Isoelectric Point: 4.4856 |
Chromosome | Chromosome/Scaffold: 01144 Start: 629412 End: 634885 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 11 | 616 | 0 |
TERQVTMDNGIVQVTLSNPDGIVTGIRYGGVDNVLEVLNDESNRGYWDLVWSSSSSTTGLFDVIKATGFEVIVENEEQVELSFTRTWDLSLEGKLVPLEI DKRFIMLRGSSGFYSYAIYQHLEEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCD NKDSGVHGWISTDPAVGFWLISPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSFDALQLWEDAKAQA VIEVQSWPYSFPASDDFPRSNQRSSISGKLLVKDSYVNEDLIPADGAFVGLAPPGDVGSWQRESKGYQFWSRADESGNFSIDGVRPGDYNLYAWVPGFIG DYRYDALINLTEGSEVDMGDITYEPPRQGATLWEIGIPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELFPDSDLVYTVGVSDYTKDWFFA QVPRKMENGTYKGTTWQVKFELDDVDNQATYKLRVALASVSLAELQVGVNEAKAKAVFSSGLIGRDNSIARHGIHGLYWVYNIDIPGNRLVTGNNTIFFT QPRCTG |
Full Sequence |
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Protein Sequence Length: 642 Download |
MPPLGVQLFI TERQVTMDNG IVQVTLSNPD GIVTGIRYGG VDNVLEVLND ESNRGYWDLV 60 WSSSSSTTGL FDVIKATGFE VIVENEEQVE LSFTRTWDLS LEGKLVPLEI DKRFIMLRGS 120 SGFYSYAIYQ HLEEWPGFNL GETRLAFKLR KDKFHYMAMA DNRQRYMPLP DDRSPPRGRA 180 LAYPEAVLLV DPIEPELQGE VDDKYQYSCD NKDSGVHGWI STDPAVGFWL ISPSNEFRSG 240 GPVKQNLTSH VGPTTLAVFI SAHYAGEDLV PKIGAGEAWK KVFGPVFIYL NSTYDSFDAL 300 QLWEDAKAQA VIEVQSWPYS FPASDDFPRS NQRSSISGKL LVKDSYVNED LIPADGAFVG 360 LAPPGDVGSW QRESKGYQFW SRADESGNFS IDGVRPGDYN LYAWVPGFIG DYRYDALINL 420 TEGSEVDMGD ITYEPPRQGA TLWEIGIPDR SAAEFYVPDP NPNYVNKLYL NHPDKFRQYG 480 LWERYSELFP DSDLVYTVGV SDYTKDWFFA QVPRKMENGT YKGTTWQVKF ELDDVDNQAT 540 YKLRVALASV SLAELQVGVN EAKAKAVFSS GLIGRDNSIA RHGIHGLYWV YNIDIPGNRL 600 VTGNNTIFFT QPRCTGPFQA IMYDYIRLEA PPPPSSAHPL E* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 332 | 431 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-50 | 443 | 629 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-75 | 13 | 293 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-99 | 1 | 201 | 201 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 636 | 1 | 649 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 636 | 1 | 620 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 630 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 5 | 631 | 5 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 632 | 1 | 634 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479599 | 294 | 1 | 292 | 0 |
DW479600 | 298 | 1 | 296 | 0 |
DT552229 | 293 | 17 | 306 | 0 |
DY293973 | 344 | 6 | 344 | 0 |
EH713128 | 268 | 75 | 340 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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