y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.166850.1 |
Family | AA7 |
Protein Properties | Length: 542 Molecular Weight: 61276.2 Isoelectric Point: 8.0674 |
Chromosome | Chromosome/Scaffold: 01154 Start: 236428 End: 239023 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 79 | 294 | 0 |
PKPLLLVTPFHESHVQAAILCAREKGLQVRVRSGGHDYEGLSYISSQAPFIVIDLINLRSIKIDIKTETASVETGASLGELYYRIAKKSSIHGFPAGSCP TVGVGGHISGGGFGTLFRKYGLAADNVIDAKIIDFNGRIMDRSSMGEDLFWAIRGGGGASFGVILSWKLKLVSVPSIVTVFNVQRTLEEGATHLFQKWQN ISHKLDQDIFLHVTTK |
Full Sequence |
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Protein Sequence Length: 542 Download |
MICFRRIHLF LLLCVSLIWL CGSSSDSLQD NFLECFNSTS YSKHSIPISE VVFTNESASF 60 SSLLRLSIRN LRFLTTTLPK PLLLVTPFHE SHVQAAILCA REKGLQVRVR SGGHDYEGLS 120 YISSQAPFIV IDLINLRSIK IDIKTETASV ETGASLGELY YRIAKKSSIH GFPAGSCPTV 180 GVGGHISGGG FGTLFRKYGL AADNVIDAKI IDFNGRIMDR SSMGEDLFWA IRGGGGASFG 240 VILSWKLKLV SVPSIVTVFN VQRTLEEGAT HLFQKWQNIS HKLDQDIFLH VTTKVVTNFP 300 SKKTIRLSFT SLFLGPIERL IPIMKTRFSE LGLKRNDCIE MSWIQSVLFF ADFSIDAPLE 360 VLMDRSSPQI SDAFFTAKSD YVTSPISENG LEGLWSKLLE EDKSELIFTP YGGKMSQISE 420 SQIPFPHREG RIFGIQYLAT WDNANENEKH LSWIREVYAY MESYVSKSPR AAYLNYRDLD 480 LGTNYGRNTS YEEAKVWGLK YFSDNFKRLV RVKTKVDPSN FFWNEQSIPL LYHYEDDTKV 540 TK 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 3.0e-18 | 93 | 531 | 456 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 2.0e-18 | 89 | 221 | 134 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 7.0e-19 | 472 | 529 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN81654.1 | 0 | 9 | 529 | 12 | 525 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277281.1 | 0 | 10 | 531 | 12 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299029.1 | 0 | 25 | 531 | 1 | 503 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317088.1 | 0 | 9 | 531 | 11 | 527 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523160.1 | 0 | 12 | 530 | 11 | 526 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 29 | 531 | 4 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 25 | 531 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 25 | 531 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 27 | 531 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 27 | 531 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |