Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.166860.1 |
Family | AA7 |
Protein Properties | Length: 546 Molecular Weight: 61777 Isoelectric Point: 8.7076 |
Chromosome | Chromosome/Scaffold: 01154 Start: 241113 End: 242896 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 84 | 300 | 0 |
PKPLFLVTPFHQSHVQAAIVCANKKGFQIRLRSGGHDYEGISYVSSDQSQFILLDLSNYRSIDIDMKTETATVEAGATLGELYYRIAEKSPTHGFPAGTC PTVGMGGHVSGGGFGTLFRKYGLAADNVIDAKIVDFNGRIMDRNSMGEDLFWAIRGGGGASFGVILSWKLKLVYVPSNVTVFLVQKTLEQGAIHLFQKWQ TIAHKLHEDLFLHVTIG |
Full Sequence |
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Protein Sequence Length: 546 Download |
MGIPQCRIRH YLFPLFYLSF ICLSSSSHSL QADSFVECFN STSYYYSPQS IPISKVVFTN 60 KSAIFSSLLQ SSIKNLRFFN TSLPKPLFLV TPFHQSHVQA AIVCANKKGF QIRLRSGGHD 120 YEGISYVSSD QSQFILLDLS NYRSIDIDMK TETATVEAGA TLGELYYRIA EKSPTHGFPA 180 GTCPTVGMGG HVSGGGFGTL FRKYGLAADN VIDAKIVDFN GRIMDRNSMG EDLFWAIRGG 240 GGASFGVILS WKLKLVYVPS NVTVFLVQKT LEQGAIHLFQ KWQTIAHKLH EDLFLHVTIG 300 VIDEQNKTPN MSSKTILISF VSLFLGPVER LIPLMNSHFP ELGLERNNCT EMSWIQSVLY 360 FAGISIEAPP EILLKRPPIS NVLFFKAKSD FVISPIPQIG LEGLWTKMLE EPASFLILSP 420 YGGKMRQISD LETPFPHRKG NTFGIQYLVT WENANETYRH LSWIREVYDY MEPYVSKYPR 480 AAYLNYRDLD LGRNCGRNTS YEEAKVWGLK YFKNNFDRLV RVKTKVDPLN FFWNEQSIPT 540 SIYHS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 2.0e-18 | 482 | 539 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 9.0e-19 | 86 | 540 | 467 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 1.0e-21 | 86 | 223 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN81654.1 | 0 | 13 | 539 | 6 | 525 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268361.1 | 0 | 13 | 539 | 6 | 525 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299029.1 | 0 | 24 | 539 | 1 | 501 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317088.1 | 0 | 8 | 540 | 1 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523160.1 | 0 | 15 | 539 | 13 | 525 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 33 | 539 | 5 | 511 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 49 | 539 | 19 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 49 | 539 | 19 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 55 | 542 | 22 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 55 | 542 | 22 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |