Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.167250.1 |
Family | AA7 |
Protein Properties | Length: 543 Molecular Weight: 60459.6 Isoelectric Point: 9.7115 |
Chromosome | Chromosome/Scaffold: 01154 Start: 625140 End: 628009 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 73 | 539 | 0 |
RFSKPETPKPLLIITPSHVSHIQAAVICSKSHDLQIRTRSGGHDYEGLSYVAYHPFIIVDLINLRSISIDIVNNTAWVESGATLGELYYRIGEKSRTLAF PAGICPTVGVGGHFSGGGYGFLLRKYGLAADNVIDAYLVDANGMVHDRESMGEDLFWAIRGGSGGSFGIVVAWKVKLVPVPAMVTICSTIKNLEDDAVKV IHQWQYVANKLHEDIFLGIVLTGGNTSTQGGIKNPIKNPIATFYSLFLGKVDELVATLSTKFPELGLIKQDCLEVRWVESTLIIASGVFQTIESLEPLLN RTPTTLDSTKIKSDYIKKPIPKAAIEGIWQRLKARDIEGPQFVFAPYGARMSQISKSETPFSHRAGYLYQIGYMVGWKGQNLKAKNRHISWIRELYEYMA PFVSKSPRAAYANYRDLDIGSNNKYGKTSYKQASIWGLKYFGNNFKRLVYVKTKVDPHDFFRHEQSI |
Full Sequence |
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Protein Sequence Length: 543 Download |
MKSSSQLIPL FLVLTIVLSA SPSWVSAFPH KHQNFVQCLS EHSSKSYPIS KVVYTPINSS 60 YSSVLNFSIR NLRFSKPETP KPLLIITPSH VSHIQAAVIC SKSHDLQIRT RSGGHDYEGL 120 SYVAYHPFII VDLINLRSIS IDIVNNTAWV ESGATLGELY YRIGEKSRTL AFPAGICPTV 180 GVGGHFSGGG YGFLLRKYGL AADNVIDAYL VDANGMVHDR ESMGEDLFWA IRGGSGGSFG 240 IVVAWKVKLV PVPAMVTICS TIKNLEDDAV KVIHQWQYVA NKLHEDIFLG IVLTGGNTST 300 QGGIKNPIKN PIATFYSLFL GKVDELVATL STKFPELGLI KQDCLEVRWV ESTLIIASGV 360 FQTIESLEPL LNRTPTTLDS TKIKSDYIKK PIPKAAIEGI WQRLKARDIE GPQFVFAPYG 420 ARMSQISKSE TPFSHRAGYL YQIGYMVGWK GQNLKAKNRH ISWIRELYEY MAPFVSKSPR 480 AAYANYRDLD IGSNNKYGKT SYKQASIWGL KYFGNNFKRL VYVKTKVDPH DFFRHEQSIP 540 TL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02805 | PLN02805 | 0.002 | 82 | 270 | 200 | + D-lactate dehydrogenase [cytochrome] | ||
pfam08031 | BBE | 1.0e-16 | 482 | 540 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 1.0e-17 | 82 | 274 | 201 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 4.0e-21 | 82 | 219 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299020.1 | 0 | 24 | 542 | 21 | 530 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002299022.1 | 0 | 24 | 542 | 14 | 523 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002299045.1 | 0 | 5 | 542 | 6 | 530 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330608.1 | 0 | 26 | 542 | 24 | 533 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 24 | 542 | 14 | 524 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 33 | 542 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 29 | 542 | 5 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 29 | 542 | 5 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsh_A | 0 | 29 | 542 | 5 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 4dns_B | 0 | 32 | 542 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |