y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.180130.1 |
Family | CE8 |
Protein Properties | Length: 263 Molecular Weight: 28576.7 Isoelectric Point: 6.0911 |
Chromosome | Chromosome/Scaffold: 01233 Start: 472632 End: 475901 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 2 | 251 | 0 |
VPKTKANVTFQGQGYTTTAIVWNDTANSSHGTFYSASVQVFSSNFIAKNLSFMNVAPIPAPGDVGAQGVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHY FKDCYIQGSIDFIFGNGRSFYESCQLVSMANPVPQGSKFVNGAVTAHGRASADENSGFSFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAPEGWN DFNDPARDQTIFYGEYNCSGAGANMSSRAPYVQRLNDTQVSSFLNLSFID |
Full Sequence |
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Protein Sequence Length: 263 Download |
MVPKTKANVT FQGQGYTTTA IVWNDTANSS HGTFYSASVQ VFSSNFIAKN LSFMNVAPIP 60 APGDVGAQGV AIRIGGDQAA FWSCGFFGAQ DTLHDDRGRH YFKDCYIQGS IDFIFGNGRS 120 FYESCQLVSM ANPVPQGSKF VNGAVTAHGR ASADENSGFS FVNCSIGGTG RVWLGRAWRP 180 FSRVVFANTV MTDIIAPEGW NDFNDPARDQ TIFYGEYNCS GAGANMSSRA PYVQRLNDTQ 240 VSSFLNLSFI DADQWLQPYS LF* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 2.0e-79 | 1 | 257 | 265 | + pectinesterase | ||
PLN02634 | PLN02634 | 8.0e-82 | 1 | 258 | 266 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-97 | 4 | 258 | 256 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-108 | 2 | 258 | 263 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 2 | 261 | 260 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 2 | 257 | 133 | 388 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 1 | 257 | 133 | 389 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267842.1 | 0 | 1 | 260 | 138 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323171.1 | 0 | 2 | 259 | 121 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 1 | 260 | 136 | 395 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4.00001e-41 | 2 | 261 | 52 | 317 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-31 | 2 | 257 | 48 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000000002 | 29 | 244 | 81 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000000002 | 29 | 244 | 81 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000000002 | 29 | 244 | 81 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GE593794 | 245 | 1 | 245 | 0 |
EE606596 | 215 | 1 | 215 | 0 |
GO018704 | 245 | 13 | 257 | 0 |
CV516831 | 218 | 43 | 260 | 0 |
FP039884 | 211 | 50 | 260 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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