| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.181040.1 |
| Family | GH28 |
| Protein Properties | Length: 379 Molecular Weight: 40973.6 Isoelectric Point: 7.1035 |
| Chromosome | Chromosome/Scaffold: 01239 Start: 73768 End: 75268 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 26 | 353 | 0 |
| KDACASTYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKICTKLPMNVKFSF VTNSMVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTGDDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTK EKEVAGVTVKSCKLINTSNGVRIKTWPDCAVAYTASDLHFEDIEMVNVSNPVIIDQEYCPSNQCNKKIPSKIKINNVSFKNIRGTSATFVAVKFICSTVF SCEGVEVTDIDLAYIGTQGRITSQCRNV | |||
| Full Sequence |
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| Protein Sequence Length: 379 Download |
| QSIFDITTYG AKPNTDITQA LANAWKDACA STYSSKLLIP MGVYHLNQSI LHGPCKSTIE 60 VRMEGTLQAH PDPIGDGLVL FQYIDQLTLS GTGAFDGQGE KGWEKNDCHL KKICTKLPMN 120 VKFSFVTNSM VKDITSLDSK NFHFNLLGCK NVTFQNVTII APENSPNTDG IHVSSSEVIN 180 IFNTRISTGD DCISVGDSNK QITITNVTCG PGHGISIGSL GKYTKEKEVA GVTVKSCKLI 240 NTSNGVRIKT WPDCAVAYTA SDLHFEDIEM VNVSNPVIID QEYCPSNQCN KKIPSKIKIN 300 NVSFKNIRGT SATFVAVKFI CSTVFSCEGV EVTDIDLAYI GTQGRITSQC RNVIPIITGK 360 QNPRACVEAA PVNSPSTD* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-72 | 3 | 367 | 372 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-73 | 2 | 350 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-81 | 1 | 366 | 378 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-106 | 29 | 353 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-120 | 3 | 366 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 3 | 366 | 30 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-18 | 91 | 283 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.000000000000002 | 167 | 351 | 165 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_B | 0.00000000000004 | 86 | 353 | 73 | 333 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_A | 0.00000000000004 | 86 | 353 | 73 | 333 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ia5_A | 0.00000000000004 | 86 | 353 | 73 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR463354 | 278 | 95 | 372 | 0 |
| GR462194 | 275 | 76 | 350 | 0 |
| CU617067 | 282 | 6 | 282 | 0 |
| CX190311 | 269 | 99 | 367 | 0 |
| CX192815 | 274 | 95 | 368 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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