| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.181130.1 |
| Family | GH28 |
| Protein Properties | Length: 291 Molecular Weight: 31238.7 Isoelectric Point: 8.3702 |
| Chromosome | Chromosome/Scaffold: 01239 Start: 135981 End: 137770 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 101 | 270 | 0 |
| VTTGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTIINTTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILIDQEYCP WNQCNREIPSNIKINKVSFKNIRGSSATPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMNVKP | |||
| Full Sequence |
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| Protein Sequence Length: 291 Download |
| ALKDAWNDAC ASDRPSAVVI PKGTFKVREG EFKGPCKSPI EFRVHGTLQA PKHPHGDSWI 60 TFAYVDRLRL SGGGVFDGQG KAGWEKNDCH KRIDCAKLPI VTTGDDCISL GDGSKRIKVN 120 NVICGPGHGI SIGSLGKYNN EEPVEGVIVN NCTIINTTNG VRIKTWPASP VAGIATNMHF 180 SDITMVNVSN PILIDQEYCP WNQCNREIPS NIKINKVSFK NIRGSSATPV AVKLICSSNL 240 PCEEVKVANI DLVYNGIKGS ITSECMNVKP IISGIQNPPI CSSSYTTASK * 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 8.0e-14 | 1 | 125 | 133 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-20 | 1 | 99 | 101 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 3.0e-42 | 100 | 287 | 189 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-50 | 99 | 269 | 171 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-57 | 101 | 281 | 181 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP37458.1 | 0 | 2 | 283 | 53 | 403 | polygalacturonase [Fragaria x ananassa] |
| GenBank | ABE77145.1 | 0 | 2 | 283 | 53 | 403 | putative polygalacturonase [Fragaria x ananassa] |
| DDBJ | BAA89478.1 | 0 | 1 | 281 | 45 | 393 | polygalacturonase [Salix gilgiana] |
| EMBL | CBI22049.1 | 0 | 1 | 287 | 46 | 339 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002329175.1 | 0 | 1 | 281 | 45 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.0000000002 | 105 | 268 | 176 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000002 | 105 | 268 | 176 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000002 | 105 | 268 | 176 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000002 | 105 | 268 | 176 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.0000000002 | 105 | 268 | 176 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC944260 | 181 | 103 | 283 | 0 |
| CN491697 | 163 | 103 | 265 | 0 |
| EC935564 | 183 | 101 | 283 | 0 |
| EC947475 | 183 | 101 | 283 | 0 |
| EC939231 | 183 | 101 | 283 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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