y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.186200.1 |
Family | PL1 |
Protein Properties | Length: 490 Molecular Weight: 53267.9 Isoelectric Point: 5.9109 |
Chromosome | Chromosome/Scaffold: 01277 Start: 49878 End: 54183 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 144 | 342 | 0 |
IVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCVPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYC TDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFQSWEMYAIGGSGNPTINSQGNRYIA |
Full Sequence |
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Protein Sequence Length: 490 Download |
MFATTGVLFF IWFLSCTLLP LTMATFNFNL TVPNLLPDPE TVAYQVQRSV NDSFFRRQML 60 SIHSKGQSNS CQTANPIDDC WRCDSNWQAN RQRLADCGIG FGRDAMGGKG GQIYVVTDSS 120 DPDPVNPRPG TLRYAVVQDE PLWIVFAADM TIKLKYELMM NSYKTLDGRG ANVHITGGGC 180 ITLQYISNVI IHNINIHHCV PTGHTNIRSS PTHVGYRGKS DGDGISIFSS RNIWIDHCSL 240 SYCTDGLIDA IMGSTGITIS NNYFSHHDEV MLLGHDDGFT PDSGMQVTIA FNLFGEKLVQ 300 RMPRCRRGYI HVVNNDFQSW EMYAIGGSGN PTINSQGNRY IAPGNPNAKE VTKRVDTNAG 360 DWSEWNWRTE GDIMVNGAFF VPSGEGLSNM YVKASSLPPK SAALVDQLTL NAGVFGGSRE 420 NRQSTSYPGD EASSSSSGSS GSDGGGDYFG MIFGGGGINN APPPSLSAVN MIILTLFTVY 480 DALLLTLSL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-24 | 107 | 338 | 244 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-60 | 155 | 340 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-68 | 149 | 344 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002265853.1 | 0 | 29 | 421 | 139 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268818.1 | 0 | 24 | 463 | 22 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 7 | 419 | 8 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 28 | 448 | 24 | 446 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 9 | 462 | 7 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 75 | 414 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 75 | 414 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 106 | 344 | 22 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000003 | 168 | 318 | 138 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000001 | 153 | 315 | 71 | 244 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |