| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.192550.1 |
| Family | GH28 |
| Protein Properties | Length: 473 Molecular Weight: 52098.4 Isoelectric Point: 6.4964 |
| Chromosome | Chromosome/Scaffold: 01333 Start: 417461 End: 419961 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 121 | 436 | 0 |
| DDYGVILVPYGFSFMIQSTIFTGPCKNGVVFQVDGTLMAPDGPDAWPKGYSAHQWLVFYRVYNMSLQGNGLIDGRGQKWWDLPCKPHKGKTMTGPCDSPI AIRFFMSSELRVEGVRIKDSPQFHFRFDNCKDVYIDSLHITSPALSPNTDGIHIENTNGVQIFNSIVANGDDCVSIGSGSFNVEIRNITCGPGHGISIGS LGNHNSRACVSNITVRDSIIKVSDNGVRIKTWQGGFGTVRGVSFNNINMDNVRNPIIIDQFYCLNKGCLNQTSAVVVSDISYIDIKGTYDIRSPPMHFGC SDSMPCMNLTLANIEL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 473 Download |
| MYNFGRLISS FAFSMTFIIF FFCLLFPVHG RWHNHAKKHK QHSHHHDHFT ISQPPSPSPS 60 SEPAGSPPED NGGSSSSSIN STSIFDVRHF GAIGDGTADD TAAFKMAWDT ACQRNDDDNN 120 DDYGVILVPY GFSFMIQSTI FTGPCKNGVV FQVDGTLMAP DGPDAWPKGY SAHQWLVFYR 180 VYNMSLQGNG LIDGRGQKWW DLPCKPHKGK TMTGPCDSPI AIRFFMSSEL RVEGVRIKDS 240 PQFHFRFDNC KDVYIDSLHI TSPALSPNTD GIHIENTNGV QIFNSIVANG DDCVSIGSGS 300 FNVEIRNITC GPGHGISIGS LGNHNSRACV SNITVRDSII KVSDNGVRIK TWQGGFGTVR 360 GVSFNNINMD NVRNPIIIDQ FYCLNKGCLN QTSAVVVSDI SYIDIKGTYD IRSPPMHFGC 420 SDSMPCMNLT LANIELFPSR GDILLDPFCW NAYGNLQTLT IPPISCLLET SSX 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-69 | 85 | 463 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 5.0e-72 | 85 | 467 | 389 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 6.0e-91 | 104 | 436 | 336 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-94 | 125 | 436 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-114 | 104 | 463 | 362 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 69 | 469 | 76 | 470 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272733.1 | 0 | 69 | 469 | 57 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002276945.1 | 0 | 11 | 472 | 1 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002320271.1 | 0 | 80 | 469 | 38 | 424 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 81 | 469 | 138 | 523 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-23 | 124 | 436 | 55 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-21 | 173 | 440 | 56 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-21 | 173 | 440 | 56 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-21 | 173 | 440 | 56 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-21 | 173 | 440 | 56 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
