| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.192980.1 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 52374.5 Isoelectric Point: 5.8885 |
| Chromosome | Chromosome/Scaffold: 01335 Start: 22683 End: 25057 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 86 | 434 | 0 |
| DGGAQLTVPPGKWLTGSFNLTSHFTLFVHKDAKILGSQVENESEWPQVALLPSYGVGRDAPGGRYSSLIFGTNLTDVVITGNNGTIDGQGAYWWDKFHKG ELNLTRPYLIEIMYSDQIQISDLTLVNSPSWFVHPIYSKNVIIQGLTILAPIDSPNTDGIDPDSCSNTRIEDCFIVSGDDCIAVKSGWDQYGIKFGMPTE DLVIKRLTCISPDSAGVALGSEMSGGIRNVRIENFTGINTQSAVRIKTARGRGGFVKDIFVRGMYLSTMKYVFWMTGNYKSHPDDKFDPAALPEITNINY RDVVAENVTYSARLEGISGDPFTNICISNVKIGLTATPKKLQWNCTDVE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MYLSQDPTKT HDAAARISAV ILLALLSLAT VEGKRSCPTN YLQVPAISCR KHTALITDFG 60 GVGDGVTSNT QAFRRAIEHL SSLAADGGAQ LTVPPGKWLT GSFNLTSHFT LFVHKDAKIL 120 GSQVENESEW PQVALLPSYG VGRDAPGGRY SSLIFGTNLT DVVITGNNGT IDGQGAYWWD 180 KFHKGELNLT RPYLIEIMYS DQIQISDLTL VNSPSWFVHP IYSKNVIIQG LTILAPIDSP 240 NTDGIDPDSC SNTRIEDCFI VSGDDCIAVK SGWDQYGIKF GMPTEDLVIK RLTCISPDSA 300 GVALGSEMSG GIRNVRIENF TGINTQSAVR IKTARGRGGF VKDIFVRGMY LSTMKYVFWM 360 TGNYKSHPDD KFDPAALPEI TNINYRDVVA ENVTYSARLE GISGDPFTNI CISNVKIGLT 420 ATPKKLQWNC TDVEGFSSDV VPPPCAPLAK AGKSGGCDFP EDQLPIERVQ LKTCFVQNPT 480 VV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 8.0e-20 | 56 | 445 | 423 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-23 | 53 | 445 | 410 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-30 | 154 | 445 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 4.0e-34 | 56 | 442 | 403 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 3.0e-55 | 44 | 358 | 341 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU17976.1 | 0 | 17 | 474 | 16 | 469 | unknown [Glycine max] |
| RefSeq | XP_002273177.1 | 0 | 17 | 474 | 1 | 450 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002327490.1 | 0 | 46 | 474 | 24 | 448 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 42 | 474 | 41 | 473 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 17 | 474 | 16 | 469 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 40 | 417 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 40 | 417 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 40 | 417 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 40 | 417 | 16 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000000006 | 98 | 391 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
