Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.193880.1 |
Family | CE8 |
Protein Properties | Length: 325 Molecular Weight: 36946.8 Isoelectric Point: 9.639 |
Chromosome | Chromosome/Scaffold: 01337 Start: 16820 End: 19924 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 26 | 313 | 0 |
LIVDKKGHGNFSTIQAAIDSVPSNNRFWVSIHIRPGLYREKVKIPYDKPYIILKGHRKRRTKVVWDDHLTVAQSPTFTSSADNIVVKSISFVNSYNYPWK NGNPRVPAVAAMITGDKSSFYRCGFYGVQDTLWDNQGRHYYHRCTIQGAVDFIFGAAQSIFQGCSISVVGEALLPYGSTSFITAQGRTNPNDANGFVFKE CNVFGSGSAYLGRPWRAYSRVIFHNSNFSNIINPNGWDPWQFVGYENHLTYVENDCYGPGSDISGRVSWEKKLSWKEIKKLISMNFID |
Full Sequence |
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Protein Sequence Length: 325 Download |
MMIFVRGNEG EPYRRVGSKK FAWKTLIVDK KGHGNFSTIQ AAIDSVPSNN RFWVSIHIRP 60 GLYREKVKIP YDKPYIILKG HRKRRTKVVW DDHLTVAQSP TFTSSADNIV VKSISFVNSY 120 NYPWKNGNPR VPAVAAMITG DKSSFYRCGF YGVQDTLWDN QGRHYYHRCT IQGAVDFIFG 180 AAQSIFQGCS ISVVGEALLP YGSTSFITAQ GRTNPNDANG FVFKECNVFG SGSAYLGRPW 240 RAYSRVIFHN SNFSNIINPN GWDPWQFVGY ENHLTYVEND CYGPGSDISG RVSWEKKLSW 300 KEIKKLISMN FIDDEGWIQD QPWL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 3.0e-76 | 13 | 319 | 321 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-80 | 26 | 319 | 294 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 6.0e-90 | 24 | 318 | 297 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-99 | 24 | 322 | 299 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 9.0e-174 | 16 | 322 | 310 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 21 | 322 | 40 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 24 | 322 | 32 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 22 | 322 | 28 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 26 | 322 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 18 | 322 | 40 | 335 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.96182e-44 | 26 | 319 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-36 | 27 | 294 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-16 | 36 | 294 | 18 | 293 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-16 | 36 | 294 | 18 | 293 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-16 | 36 | 294 | 18 | 293 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE476551 | 223 | 24 | 243 | 0 |
DK492309 | 212 | 24 | 233 | 0 |
EV030104 | 211 | 24 | 231 | 0 |
DR369050 | 171 | 24 | 191 | 0 |
DK492309 | 41 | 232 | 272 | 8.2 |
Sequence Alignments (This image is cropped. Click for full image.) |
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