Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.205370.1 |
Family | GH28 |
Protein Properties | Length: 434 Molecular Weight: 45987.5 Isoelectric Point: 9.0526 |
Chromosome | Chromosome/Scaffold: 01416 Start: 463305 End: 465948 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 420 | 0 |
KACHSSGPAKVVFPPGTFLTGPLVYAGPCDGPMTVEIQGTVKATTDISQYSSAEWILFESVTGLNLIGRGTFDGQGADTWKYNDCSKHPQCIIPPTSIKF NKVTQGLMEGITSVNSKAFHIFVVLSHNIKINNVHIVAPGNSPNTDGVHISQTDVVNVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGISVGSLGKY RDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQNIVLDKVRNPIIIDQNYGSKTKKSPSQVKVSDVQFKNIRGTTISPVAVSLQCSAALPC DGIKLEQIDVAFSGTHLKQPFANSCLNAK |
Full Sequence |
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Protein Sequence Length: 434 Download |
MTIPERFHVA AVRGLVLGLT LLSSMVWCSS AAAPHYSGDF FGTRSRFLTG AAPATTTTTT 60 TPTAKVFNII AHGAKADGRT DSTQAFMQAW VKACHSSGPA KVVFPPGTFL TGPLVYAGPC 120 DGPMTVEIQG TVKATTDISQ YSSAEWILFE SVTGLNLIGR GTFDGQGADT WKYNDCSKHP 180 QCIIPPTSIK FNKVTQGLME GITSVNSKAF HIFVVLSHNI KINNVHIVAP GNSPNTDGVH 240 ISQTDVVNVT NSIIGTGDDC VSIGHGSTNI NVLNITCGPG HGISVGSLGK YRDEKEVRGI 300 FVSNCTIRNT TNGVRIKTWA ASPPGQATRI TFQNIVLDKV RNPIIIDQNY GSKTKKSPSQ 360 VKVSDVQFKN IRGTTISPVA VSLQCSAALP CDGIKLEQID VAFSGTHLKQ PFANSCLNAK 420 ITTIGKQNPP ACV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-86 | 73 | 429 | 365 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-87 | 66 | 433 | 374 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-87 | 65 | 432 | 377 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-97 | 94 | 401 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-135 | 67 | 432 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 1 | 432 | 1 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 1 | 432 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 9 | 432 | 1 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 84 | 432 | 2 | 352 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 15 | 432 | 8 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-17 | 163 | 374 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-17 | 163 | 374 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-17 | 163 | 374 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-17 | 163 | 374 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-17 | 163 | 374 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |