y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.205390.1 |
Family | GH28 |
Protein Properties | Length: 209 Molecular Weight: 22660.6 Isoelectric Point: 5.4352 |
Chromosome | Chromosome/Scaffold: 01416 Start: 509714 End: 510925 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 209 | 1.2e-23 |
IDDTHIAACRNTTGPTGTFLLVRKGFPITFENQETVKITTDININDFILTDSDSGVFDGQGTAAYCSFLLQFIKFSILNHTIVDGLTSLNNKGFHTSVFY SYNFIATNINIIALAPHNSSNTDGMHISTSTLVTITNNVIGTSDDCVSIGHSSEKITVTN |
Full Sequence |
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Protein Sequence Length: 209 Download |
MTSSLGLFQI LLLVLAWQCV QSTVTNVNLN ENGGSVFDIT KHVAKADRMI DDTHIAACRN 60 TTGPTGTFLL VRKGFPITFE NQETVKITTD ININDFILTD SDSGVFDGQG TAAYCSFLLQ 120 FIKFSILNHT IVDGLTSLNN KGFHTSVFYS YNFIATNINI IALAPHNSSN TDGMHISTST 180 LVTITNNVIG TSDDCVSIGH SSEKITVTN 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-9 | 132 | 209 | 78 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-10 | 98 | 208 | 111 | + polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-13 | 1 | 208 | 246 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-18 | 97 | 209 | 122 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-26 | 8 | 208 | 242 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 3e-27 | 29 | 209 | 37 | 254 | unnamed protein product [Vitis vinifera] |
EMBL | CBI37725.1 | 6e-22 | 36 | 209 | 52 | 259 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 1e-27 | 29 | 209 | 37 | 250 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002279959.1 | 7e-22 | 36 | 209 | 52 | 259 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 4e-24 | 36 | 209 | 42 | 249 | predicted protein [Populus trichocarpa] |