| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.205400.1 |
| Family | GH28 |
| Protein Properties | Length: 454 Molecular Weight: 48608.4 Isoelectric Point: 7.3629 |
| Chromosome | Chromosome/Scaffold: 01416 Start: 511755 End: 514150 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 110 | 439 | 0 |
| ACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWAYNDCKKNNLCQPLPISIK FTRLNHTIVDGLTSINSMGFHTSVFYCYNFTATNMKITAPHNSPNTDGMHLSTSKLVTIANSVIGTGDDCVSIGHSTENITVTNVTCGPGHGLSVGSLGK YSKEKGVYDVLVKNCTIFNATNGARIKTWASPISGLASRIIFEDIVMYGVKNPIIIDQTYGTKKSEESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPC EGVELRDINLSYGGSNLRNSTIVSSCSNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 454 Download |
| MTRNLSLIQI LLLVFACQCC AVIFDDVTGT QNLLKGIVPK ANEQFLRPAE APRHLGFSTL 60 PNIGGTVNDI KANVDLNENG GSVFDVTKHG AKGDGETDDA HAFMTTWIAA CRNTVGPTKF 120 LIPQGTFLVG PVTFAGPCKS FPITLENQGT VKATTDISAY SSPEWFSLED ITGFILTGSG 180 VFDGQGLSVW AYNDCKKNNL CQPLPISIKF TRLNHTIVDG LTSINSMGFH TSVFYCYNFT 240 ATNMKITAPH NSPNTDGMHL STSKLVTIAN SVIGTGDDCV SIGHSTENIT VTNVTCGPGH 300 GLSVGSLGKY SKEKGVYDVL VKNCTIFNAT NGARIKTWAS PISGLASRII FEDIVMYGVK 360 NPIIIDQTYG TKKSEESNWK VSNVQFKNIR GTSTTNVAVL LECSKLFPCE GVELRDINLS 420 YGGSNLRNST IVSSCSNAKI ATFGVQNPPP CVV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-80 | 81 | 420 | 349 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-83 | 74 | 452 | 384 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-88 | 83 | 451 | 380 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-98 | 111 | 440 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-131 | 72 | 451 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 80 | 444 | 52 | 418 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36886.1 | 0 | 76 | 451 | 37 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268540.1 | 0 | 76 | 451 | 37 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 80 | 451 | 52 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 67 | 451 | 29 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-23 | 178 | 420 | 115 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000002 | 158 | 369 | 51 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000002 | 158 | 369 | 51 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000002 | 158 | 369 | 51 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000002 | 158 | 369 | 51 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
