| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.205410.1 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 49500.5 Isoelectric Point: 5.8647 |
| Chromosome | Chromosome/Scaffold: 01416 Start: 518480 End: 520686 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 114 | 443 | 0 |
| ACRNTVGPAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIKNNLCQLLPISIK FSRLNHTIIDGLTSINSMGFHTSVFYCYNFTATNMKITAPHNSPNTDGMHLSTSKLVTISNSIIGTGDDCVSIGHSTENIIITNVTCGPGHGLSVGSLGK YSKEKGVYDVLVKNCTIFNATNGARIKTFASPIPGLASRIVFEDIVMYNVKNPIIIDQTYGTEEGKESNWKVSDILFKNIRGTSTTNVAVLLECSKLFPC EGVELRDINLTYGGTDLRNTTVVSSCSNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MTRNFSLIQI LLLVFAWECC ARAAAIFIDT INTQILLNGI VPKVNEQFLR PAEAPWHLGF 60 STLPNIGGGT VNDIKVNVDL NENGGLVFDV TKHGAKADGE TDDAQAFMTT WIAACRNTVG 120 PAKFLIPQDI FLVGPVTFAG PCKSFPITLE NQGTVKATTD ISAYSSSEWF SIEDVTGFIL 180 TGSGVFDGQG VSVWTYNDCI KNNLCQLLPI SIKFSRLNHT IIDGLTSINS MGFHTSVFYC 240 YNFTATNMKI TAPHNSPNTD GMHLSTSKLV TISNSIIGTG DDCVSIGHST ENIIITNVTC 300 GPGHGLSVGS LGKYSKEKGV YDVLVKNCTI FNATNGARIK TFASPIPGLA SRIVFEDIVM 360 YNVKNPIIID QTYGTEEGKE SNWKVSDILF KNIRGTSTTN VAVLLECSKL FPCEGVELRD 420 INLTYGGTDL RNTTVVSSCS NAKIATFGVQ NPPPCDRV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 7.0e-77 | 90 | 452 | 372 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-82 | 78 | 455 | 383 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-82 | 87 | 455 | 379 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-96 | 115 | 444 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-129 | 80 | 455 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 84 | 448 | 52 | 418 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36886.1 | 0 | 80 | 455 | 37 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268540.1 | 0 | 80 | 455 | 37 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 84 | 455 | 52 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 87 | 456 | 45 | 413 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-24 | 182 | 428 | 115 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000000003 | 144 | 440 | 37 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000000003 | 144 | 440 | 37 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000000003 | 144 | 440 | 37 | 338 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.0000000000005 | 162 | 441 | 51 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
