Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.207490.1 |
Family | GT47 |
Protein Properties | Length: 407 Molecular Weight: 46103.4 Isoelectric Point: 9.9745 |
Chromosome | Chromosome/Scaffold: 01443 Start: 314436 End: 316606 |
Description | FRA8 homolog |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 95 | 391 | 0 |
NDLKVFVYDLPPEFNANWLSDARCGGHLFASEVAIHKALLTSHVRTLDPSEADFFFVPVYVSCNFSSFNGFPAIAHAPSLLASAVDVISGQFPFWNRSRG FDHVFVASHDYGACFHSLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYISPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKR VRTTIWKKFHRDRRFYLRRHRFAGYRSEIARSVFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFPSAVDWPGISLTVAEKDVGKLRKILERV |
Full Sequence |
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Protein Sequence Length: 407 Download |
MIVLPKMVEI SRTSKKKRFL NFNIINHRKN TLICFKSSKY LLLSTCFSFY VFTSFLLTHN 60 NSPNHPNLIH HLSNSKSFPS KALVESTFDY YGNTNDLKVF VYDLPPEFNA NWLSDARCGG 120 HLFASEVAIH KALLTSHVRT LDPSEADFFF VPVYVSCNFS SFNGFPAIAH APSLLASAVD 180 VISGQFPFWN RSRGFDHVFV ASHDYGACFH SLEDMAIANG IPEFLKNSII LQTFGVKYKH 240 PCQDVENILI PPYISPEFME PAVVDGRRRD IFAFFRGKME VNPKNVGGRF YGKRVRTTIW 300 KKFHRDRRFY LRRHRFAGYR SEIARSVFCL CPLGWAPWSP RLVESVALGC VPVIIADGIR 360 LPFPSAVDWP GISLTVAEKD VGKLRKILER VAATNLTVIQ KKPVGP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02543 | CmcH_NodU | 0.005 | 189 | 289 | 112 | + Carbamoyltransferase. This family consists of NodU from Rhizobium and CmcH from Nocardia lactamdurans. NodU a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. CmcH is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity, EC:2.1.3.7 catalyzing the reaction: Carbamoyl phosphate + 3-hydroxymethylceph-3-EM-4-carboxylate <=> phosphate + 3-carbamoyloxymethylcephem. | ||
pfam03016 | Exostosin | 4.0e-66 | 97 | 391 | 307 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33322.1 | 0 | 26 | 406 | 12 | 401 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
RefSeq | NP_197685.2 | 0 | 42 | 401 | 50 | 417 | F8H (FRA8 HOMOLOG); catalytic [Arabidopsis thaliana] |
RefSeq | XP_002275679.1 | 0 | 7 | 406 | 1 | 411 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314302.1 | 0 | 26 | 406 | 32 | 421 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523710.1 | 0 | 7 | 406 | 1 | 420 | transferase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AM728275 | 269 | 9 | 277 | 0 |
HO797103 | 319 | 92 | 406 | 0 |
AM717228 | 212 | 1 | 212 | 0 |
CK261693 | 290 | 121 | 406 | 0 |
DY287013 | 283 | 129 | 406 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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