Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.219120.1 |
Family | GH10 |
Protein Properties | Length: 549 Molecular Weight: 61835.4 Isoelectric Point: 7.0357 |
Chromosome | Chromosome/Scaffold: 01658 Start: 993463 End: 998028 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 193 | 453 | 0 |
GFPVGCAINRNILNNSPYQNWFLSRFTTTTFENEMKWYSNEQTPGRVDYSVSDAMIYFAKQHNIAVRGHNVIWDDPEFLQGWVKSLSNTALYRAARRRLN SVMSKYRGQVIAWDVENENLHFNFFESKLGWPASGLFYNWAMKADQSIPLFLNEFNTIESSGDAASSPARYLQKLDTIRKFPGNSGGRFAIGLESHFGPS PNIAYMRSAIDTLGSAGVPIWLTEVDVSNSANQAYNLEQVLREGFSHPKVNGIVIWSAWAP |
Full Sequence |
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Protein Sequence Length: 549 Download |
CLVNPESAQY KGGIIENPEM KDGLKGWFPF GSAKIEHREE SNGNVFIVAH SRNHSYDTFS 60 QTLHLHSNII YTFSAWVQVN EGKADVAAVI KTRRGYGHVA VTVAQSNCWS FFKGGLTVTE 120 PGPVELYFES NNTKVEIWVD SVSLQPFTQE QWRAHQDQAI EKYRKRRVKI QTLNKEGNPL 180 PNATISLGQW RPGFPVGCAI NRNILNNSPY QNWFLSRFTT TTFENEMKWY SNEQTPGRVD 240 YSVSDAMIYF AKQHNIAVRG HNVIWDDPEF LQGWVKSLSN TALYRAARRR LNSVMSKYRG 300 QVIAWDVENE NLHFNFFESK LGWPASGLFY NWAMKADQSI PLFLNEFNTI ESSGDAASSP 360 ARYLQKLDTI RKFPGNSGGR FAIGLESHFG PSPNIAYMRS AIDTLGSAGV PIWLTEVDVS 420 NSANQAYNLE QVLREGFSHP KVNGIVIWSA WAPWGCYRMC LTDNNFRNLP TGDVVDKLLK 480 EWGIKGSITA TTDSNGFFEA SLFHGEYEMK ISHPSVAKSS IDAQKFSVLP ASEGESEQQS 540 PLLIQVEF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 1.0e-25 | 196 | 470 | 306 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-43 | 194 | 448 | 279 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 4.0e-66 | 227 | 475 | 272 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN10199.1 | 0 | 1 | 546 | 40 | 584 | endoxylanase [Carica papaya] |
RefSeq | NP_195110.3 | 0 | 1 | 543 | 33 | 571 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002264605.1 | 0 | 1 | 539 | 35 | 567 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313180.1 | 0 | 1 | 520 | 3 | 519 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532418.1 | 0 | 1 | 546 | 31 | 566 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 5e-24 | 197 | 475 | 16 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1ta3_B | 5e-20 | 197 | 448 | 18 | 268 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1v0n_A | 6e-20 | 183 | 448 | 3 | 266 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1v0m_A | 6e-20 | 183 | 448 | 3 | 266 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1v0l_A | 6e-20 | 183 | 448 | 3 | 266 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AM722845 | 269 | 160 | 428 | 0 |
EX266128 | 290 | 210 | 498 | 0 |
GR150167 | 263 | 5 | 267 | 0 |
GR160803 | 262 | 37 | 298 | 0 |
EX266128 | 44 | 488 | 529 | 0.076 |
Sequence Alignments (This image is cropped. Click for full image.) |
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