| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.228510.1 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 51806.1 Isoelectric Point: 8.4042 |
| Chromosome | Chromosome/Scaffold: 01933 Start: 399421 End: 403052 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 101 | 445 | 0 |
| DKGGSKLTVPKGSWVTGSFNLTSNFTLFLQRGALILASQKRNPDEWPIIEPLPSYGRGRERLGGRHISLIHGNALSNVVITGENGTIDGQGKMWWELWWN RTLNHTRGHLVELINSHNILISNLTFKNSPFWTIHPVYCSNVVIKDMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGINLARPS SNIVIRRVSGTTPTCSGVGIGSEMSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSITNFVMNRVKMAIRFSRGSNDHPDEQFDPKAVPKVKGIF ITNLMSLNSTKAPVLYGIAGTSYDGVCMKNVTILGLTPSAKWHCA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MDSDKSKFYF GPPINPSCSS LLLLFIFLAI LTFQIATRTP PFPFWLPPSD FQLPTCSAFF 60 RPDATAGVVM SITDFGGVGD GKTSNTEAFR KAIQYMRRFG DKGGSKLTVP KGSWVTGSFN 120 LTSNFTLFLQ RGALILASQK RNPDEWPIIE PLPSYGRGRE RLGGRHISLI HGNALSNVVI 180 TGENGTIDGQ GKMWWELWWN RTLNHTRGHL VELINSHNIL ISNLTFKNSP FWTIHPVYCS 240 NVVIKDMTIL APLNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGINLARPS 300 SNIVIRRVSG TTPTCSGVGI GSEMSGGISN ITIEDLNVWD SAAGIRIKSD QGRGGYIANV 360 SITNFVMNRV KMAIRFSRGS NDHPDEQFDP KAVPKVKGIF ITNLMSLNST KAPVLYGIAG 420 TSYDGVCMKN VTILGLTPSA KWHCAFVSGF STSVFPTPCP QLQNTTFSSL CSSF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-19 | 170 | 374 | 212 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-27 | 57 | 469 | 429 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-27 | 58 | 441 | 402 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-29 | 170 | 374 | 213 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-58 | 64 | 374 | 335 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 52 | 464 | 48 | 458 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 52 | 471 | 59 | 476 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 52 | 471 | 59 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 55 | 472 | 20 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 55 | 472 | 60 | 478 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 7.00005e-41 | 70 | 440 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 7.00005e-41 | 70 | 440 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 7.00005e-41 | 70 | 440 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 7.00005e-41 | 70 | 440 | 28 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-18 | 114 | 448 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
