| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.237900.1 |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 46305.5 Isoelectric Point: 7.5416 |
| Chromosome | Chromosome/Scaffold: 02023 Start: 587241 End: 589474 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 99 | 431 | 0 |
| WKEACASAGPSKVIIPSGTYTLGAIELKGECTSTPIEMQVQATLLAPPDLKGEDWVHFKYVNDLSVSGGGVFDGQGKKTWESNDCHKNPKCAPMPMSLKF SFIKNSVVSGITSKDSKNFHIQVLGCNNFTLQNVNVNAPGTSINTDGIHLGRCVGINILNSNIGTGDDCISLGDGSKQVTITNVTCGPGHGISVGSLGRY NAEEPVEGLQVKNCTITGTTSGLRIKTWPASPAAGVASDMHYEDIVMNNVSNPIMIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNAQAVTLVCSS SNPCEGVELADIDLTYTGNEGPITSVCANVKPT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MSIINFNIIT ALIAFILLLY VSIATAQSST GAATQPGGAA AQPGGATVQP TAAANSSGGA 60 TVQPTAAANS SGGAGGVFDV TKYGAKPNAD ITQALATAWK EACASAGPSK VIIPSGTYTL 120 GAIELKGECT STPIEMQVQA TLLAPPDLKG EDWVHFKYVN DLSVSGGGVF DGQGKKTWES 180 NDCHKNPKCA PMPMSLKFSF IKNSVVSGIT SKDSKNFHIQ VLGCNNFTLQ NVNVNAPGTS 240 INTDGIHLGR CVGINILNSN IGTGDDCISL GDGSKQVTIT NVTCGPGHGI SVGSLGRYNA 300 EEPVEGLQVK NCTITGTTSG LRIKTWPASP AAGVASDMHY EDIVMNNVSN PIMIDQEYCP 360 YNKCNKQIPS KVKISKVSFK NIRGTSGNAQ AVTLVCSSSN PCEGVELADI DLTYTGNEGP 420 ITSVCANVKP TITGKQNPPI SLKLKFL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-77 | 80 | 429 | 361 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-82 | 77 | 439 | 376 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 6.0e-85 | 77 | 427 | 358 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-114 | 103 | 429 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-136 | 78 | 439 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 67 | 434 | 20 | 386 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 67 | 434 | 20 | 386 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 67 | 434 | 20 | 386 | polygalacturonase [Salix gilgiana] |
| Swiss-Prot | P24548 | 0 | 90 | 440 | 1 | 353 | PGLR_OENOR RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase |
| RefSeq | XP_002329175.1 | 0 | 67 | 434 | 20 | 386 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-20 | 164 | 382 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-16 | 162 | 428 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-16 | 162 | 428 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-16 | 162 | 428 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-16 | 162 | 428 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
