| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.242950.1 |
| Family | GH28 |
| Protein Properties | Length: 462 Molecular Weight: 50869.3 Isoelectric Point: 7.0133 |
| Chromosome | Chromosome/Scaffold: 02047 Start: 2560990 End: 2564154 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 66 | 385 | 0 |
| VTFPPGTYLTATIWLRSGVVLDIQPGATVLAGTKMEDYPADSSRWFAVVAENASDVGISGGGTVDGQGLKFVEKFDKRKNVMVSWNKTGACYGDECRPDL VGFIGSNKVRVSNVSFNQPAHWCLHLVRCENTVIEDVSIYGDFDTPNNDGIDIEDSNNTLITRCRIDTGDDAICPKSSNGPVFNLTATNCWIRTKSSAIK LGSASWFNFTRMLFDNLTIVDSHRGLAFQLRDGGSANDITFSNINITTRYYDPSWWGRAEPIYVTTCPRDPGSKEGSISNIRFINITATSENGVFLSGSK SGVLSNLRFTNVKLRYKRWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 462 Download |
| MAIAIQLFFF LLIIHSHSAI PSIRLLRRST SFSVTDFGAI GDGLHYDTTA IQSAINSCPA 60 PSRCYVTFPP GTYLTATIWL RSGVVLDIQP GATVLAGTKM EDYPADSSRW FAVVAENASD 120 VGISGGGTVD GQGLKFVEKF DKRKNVMVSW NKTGACYGDE CRPDLVGFIG SNKVRVSNVS 180 FNQPAHWCLH LVRCENTVIE DVSIYGDFDT PNNDGIDIED SNNTLITRCR IDTGDDAICP 240 KSSNGPVFNL TATNCWIRTK SSAIKLGSAS WFNFTRMLFD NLTIVDSHRG LAFQLRDGGS 300 ANDITFSNIN ITTRYYDPSW WGRAEPIYVT TCPRDPGSKE GSISNIRFIN ITATSENGVF 360 LSGSKSGVLS NLRFTNVKLR YKRWTKYGGG IADYRPGCQG FVKHGMAGMI MEHIEGLNLE 420 NVDMHWFDTN GSLQWNNPLD FRPSTVNNIS FFNFHSGYSS G* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-14 | 17 | 379 | 390 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-17 | 58 | 381 | 344 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 9.0e-18 | 29 | 382 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 9.0e-18 | 26 | 380 | 376 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 3.0e-47 | 29 | 314 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 15 | 457 | 18 | 469 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 15 | 457 | 18 | 469 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 5 | 460 | 8 | 468 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 5 | 460 | 8 | 463 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 30 | 457 | 11 | 440 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 8e-18 | 33 | 308 | 158 | 484 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 2uvf_A | 8e-18 | 33 | 308 | 158 | 484 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 2uve_B | 8e-18 | 33 | 308 | 158 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 8e-18 | 33 | 308 | 158 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 0.000000000000001 | 31 | 378 | 27 | 387 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
