| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.249050.1 |
| Family | GH28 |
| Protein Properties | Length: 400 Molecular Weight: 43760.8 Isoelectric Point: 9.4976 |
| Chromosome | Chromosome/Scaffold: 02208 Start: 199112 End: 202673 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 63 | 388 | 0 |
| EACSSRKATLLVPKGRTYYLKPIIFSGPCRSPLTLKINGMIKASTRISDYENDGRRHWLKFHEVDNFVVEGNGIINGNGRKWWQNSCKVNRGLAVTFYQC INLVVSNLMFKDAQQMHLTFQKCTKVKALNLRVVAPGNSPNTDGIHITETQNAIIRNCVIGTGDDCISIVSGSRNVQAMDITCGPGHGISIGSLGADNSE AEVSNIRVNRALISGTSNGVRIKTWQGGSGYAKNIMFQNVVMRNVSNPIIIDQNYCDKKESCPEQKSAVKVSNVVYKNIRGTSASGDAIKFDCSKSFPCQ GISLLGIRIVGQGNQEAVTASCENVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 400 Download |
| DYPTPASLYT SRNTDFHSSM MTKKRPDRGS SFSGSTKVVN VDDFGAKGNG QDDTKAFELA 60 WKEACSSRKA TLLVPKGRTY YLKPIIFSGP CRSPLTLKIN GMIKASTRIS DYENDGRRHW 120 LKFHEVDNFV VEGNGIINGN GRKWWQNSCK VNRGLAVTFY QCINLVVSNL MFKDAQQMHL 180 TFQKCTKVKA LNLRVVAPGN SPNTDGIHIT ETQNAIIRNC VIGTGDDCIS IVSGSRNVQA 240 MDITCGPGHG ISIGSLGADN SEAEVSNIRV NRALISGTSN GVRIKTWQGG SGYAKNIMFQ 300 NVVMRNVSNP IIIDQNYCDK KESCPEQKSA VKVSNVVYKN IRGTSASGDA IKFDCSKSFP 360 CQGISLLGIR IVGQGNQEAV TASCENVRWE TKLKVYPQC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-88 | 40 | 391 | 356 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-94 | 35 | 388 | 364 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-108 | 65 | 387 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-128 | 35 | 366 | 341 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-134 | 9 | 399 | 408 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 9 | 399 | 58 | 458 | polygalacturonase precursor [Cucumis melo] |
| Swiss-Prot | P35336 | 0 | 5 | 399 | 49 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002313308.1 | 0 | 35 | 399 | 5 | 375 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 19 | 399 | 60 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529616.1 | 0 | 27 | 399 | 96 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-19 | 131 | 322 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 1e-16 | 26 | 371 | 8 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1hg8_A | 0.000000000000001 | 203 | 385 | 165 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.000000000000002 | 116 | 344 | 54 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000002 | 116 | 344 | 54 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX261408 | 262 | 35 | 288 | 0 |
| EE093402 | 257 | 112 | 361 | 0 |
| EH767961 | 244 | 156 | 399 | 0 |
| EE091344 | 237 | 142 | 371 | 0 |
| EX261408 | 36 | 285 | 320 | 0.00001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
