| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.252790.1 |
| Family | GH28 |
| Protein Properties | Length: 458 Molecular Weight: 49303.5 Isoelectric Point: 5.5162 |
| Chromosome | Chromosome/Scaffold: 02229 Start: 1652198 End: 1656208 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 419 | 0 |
| DKGGAQLYVPPGKWLTGSINLTSHLTLFLEKGAVILGSQDPSHWELVNPLPSYGRGIEVPGKRYRSLINGYNLQDVVITGDDGVIDGQGLVWWNWFSSHS LNYSRPHLVEFEDSQYVVVSNLTFLNTPAYNIHPVYCSNVYVYNISVSAPSESPYTVGIVPDSSDHVCIEGCNIATGYDAIALKSGWDQYGIAYGRPSKN IHIRRVHLQSSSGSSIAFGSEMSGGISNVLVEHVQLNNSFIGIQIRTTKGRGGYIKGIVVSDVEMENISTAFSASGHFGSHPDDEYDPNALPIVQDITLQ NVRGTNIKIAGNFSGIQESPFTSIYLSNITFSINSSSSTSWICSDVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 458 Download |
| MRMLLVALLL FLQLSNAAKI IGEELVGQCD SKPTLDPRPH SVSILEFGAV GDGKTLNTIA 60 FQNAIFYLKS FADKGGAQLY VPPGKWLTGS INLTSHLTLF LEKGAVILGS QDPSHWELVN 120 PLPSYGRGIE VPGKRYRSLI NGYNLQDVVI TGDDGVIDGQ GLVWWNWFSS HSLNYSRPHL 180 VEFEDSQYVV VSNLTFLNTP AYNIHPVYCS NVYVYNISVS APSESPYTVG IVPDSSDHVC 240 IEGCNIATGY DAIALKSGWD QYGIAYGRPS KNIHIRRVHL QSSSGSSIAF GSEMSGGISN 300 VLVEHVQLNN SFIGIQIRTT KGRGGYIKGI VVSDVEMENI STAFSASGHF GSHPDDEYDP 360 NALPIVQDIT LQNVRGTNIK IAGNFSGIQE SPFTSIYLSN ITFSINSSSS TSWICSDVSG 420 FSESVIPPPC SDLSTPYSIS SSAASPLVNS TGKTAVL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-15 | 40 | 398 | 376 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 3.0e-15 | 38 | 430 | 432 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-18 | 39 | 378 | 361 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-19 | 178 | 377 | 209 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-44 | 42 | 393 | 389 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 15 | 430 | 12 | 427 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 15 | 430 | 14 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 17 | 438 | 14 | 434 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 17 | 455 | 16 | 448 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 15 | 457 | 12 | 454 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.99997e-41 | 14 | 400 | 3 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.99997e-41 | 14 | 400 | 3 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.99997e-41 | 14 | 400 | 3 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.99997e-41 | 14 | 400 | 3 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-19 | 86 | 379 | 52 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
