| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.252830.1 |
| Family | GH28 |
| Protein Properties | Length: 359 Molecular Weight: 38846.4 Isoelectric Point: 5.4847 |
| Chromosome | Chromosome/Scaffold: 02229 Start: 1683843 End: 1686643 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 4 | 326 | 0 |
| WEDACYHQGGSMLLIPEGNYFVDQVTFSGPCFNDLSPKVLILGTLIAPTNLTADVWIHFDSLRRLSLTAGHLSTLDGRGAQTWSSGSRCRHAMTCAMFAI SLKLSNVLNGTVSSINLVDSKAFHVSIHQCDNIHLSGFNITAPWYSQNTDGFHISQSTNISITNSKIGVGDDCVSIGPGSVNVLVSNVTCGPGHGISIGS LGRYKMENDVRGIWVENCTISGTQNGVRVKTWPGDHASNATNLTFQNIVMINVSNPIIIDQQYCPNSSCDSRESSSVKLSDINIRNISGTYNSEFAINMK CSSTKACENIRLSYINLTSINHQ | |||
| Full Sequence |
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| Protein Sequence Length: 359 Download |
| MAAWEDACYH QGGSMLLIPE GNYFVDQVTF SGPCFNDLSP KVLILGTLIA PTNLTADVWI 60 HFDSLRRLSL TAGHLSTLDG RGAQTWSSGS RCRHAMTCAM FAISLKLSNV LNGTVSSINL 120 VDSKAFHVSI HQCDNIHLSG FNITAPWYSQ NTDGFHISQS TNISITNSKI GVGDDCVSIG 180 PGSVNVLVSN VTCGPGHGIS IGSLGRYKME NDVRGIWVEN CTISGTQNGV RVKTWPGDHA 240 SNATNLTFQN IVMINVSNPI IIDQQYCPNS SCDSRESSSV KLSDINIRNI SGTYNSEFAI 300 NMKCSSTKAC ENIRLSYINL TSINHQSDDD EDEEEGDVTG NFNFKGALNS FTIFNSTF* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-62 | 1 | 321 | 326 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-67 | 3 | 320 | 323 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-69 | 3 | 324 | 335 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-79 | 14 | 322 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-93 | 1 | 320 | 327 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 1 | 320 | 76 | 395 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN69218.1 | 0 | 1 | 358 | 510 | 863 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22963.1 | 0 | 1 | 358 | 52 | 405 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002270999.1 | 0 | 1 | 358 | 91 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 1 | 320 | 76 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-20 | 66 | 297 | 68 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-20 | 66 | 297 | 68 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-20 | 66 | 297 | 68 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-20 | 66 | 297 | 68 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-20 | 66 | 297 | 68 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR930531 | 288 | 2 | 284 | 0 |
| DR932296 | 256 | 39 | 290 | 0 |
| DW091705 | 309 | 14 | 319 | 0 |
| EH772281 | 281 | 45 | 321 | 0 |
| EC944002 | 238 | 78 | 315 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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