PlantCAZyme

Basic Information
Species	Cucumis sativus
Cazyme ID	Cucsa.252840.1
Family	GH28
Protein Properties	Length: 377 Molecular Weight: 40687.6 Isoelectric Point: 8.8543
Chromosome	Chromosome/Scaffold: 02229 Start: 1688732 End: 1690359
Description	polygalacturonase 4
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH28	29	363	0
AACHSKGAARVVIPRGTFLINQIAFAGPCASTSPIIVQIDATLKGGVDISNYFSDEWILFEKINGLIVTGRGALDGQGSAVWEYNDCGMNPNCQKLPVNL KLNNITHGLVKGISSVNSKGFHMFVTNCENVRLRKLHLTAPEDSPNTDGIHLSRSNNIKISRSVIATGDDCISLGRGSMNVAINKITCGPGHGISVGSLG KYPNEEDVRGIVVKNCTLLSTDNGLRIKTWPDSPPSAASGILFQDINMVNVKNPILIDQEYSCSKTNCQRPPSRVKISDVHYINVKGSSISPVAVQLKCS KQFPCQNIEMFNINLKYSGPPNKELPFSAKCSNAK

Full Sequence
Protein Sequence Length: 377 Download
ETVFNVLSFG AKPDGKTDNS ESFMKTWVAA CHSKGAARVV IPRGTFLINQ IAFAGPCAST 60 SPIIVQIDAT LKGGVDISNY FSDEWILFEK INGLIVTGRG ALDGQGSAVW EYNDCGMNPN 120 CQKLPVNLKL NNITHGLVKG ISSVNSKGFH MFVTNCENVR LRKLHLTAPE DSPNTDGIHL 180 SRSNNIKISR SVIATGDDCI SLGRGSMNVA INKITCGPGH GISVGSLGKY PNEEDVRGIV 240 VKNCTLLSTD NGLRIKTWPD SPPSAASGIL FQDINMVNVK NPILIDQEYS CSKTNCQRPP 300 SRVKISDVHY INVKGSSISP VAVQLKCSKQ FPCQNIEMFN INLKYSGPPN KELPFSAKCS 360 NAKVGYRGLQ FPPPCK* 420

Full Sequence

Protein Sequence Length: 377 Download

ETVFNVLSFG AKPDGKTDNS ESFMKTWVAA CHSKGAARVV IPRGTFLINQ IAFAGPCAST    60
SPIIVQIDAT LKGGVDISNY FSDEWILFEK INGLIVTGRG ALDGQGSAVW EYNDCGMNPN    120
CQKLPVNLKL NNITHGLVKG ISSVNSKGFH MFVTNCENVR LRKLHLTAPE DSPNTDGIHL    180
SRSNNIKISR SVIATGDDCI SLGRGSMNVA INKITCGPGH GISVGSLGKY PNEEDVRGIV    240
VKNCTLLSTD NGLRIKTWPD SPPSAASGIL FQDINMVNVK NPILIDQEYS CSKTNCQRPP    300
SRVKISDVHY INVKGSSISP VAVQLKCSKQ FPCQNIEMFN INLKYSGPPN KELPFSAKCS    360
NAKVGYRGLQ FPPPCK*                                                   420

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02793	PLN02793	2.0e-86	1	375	382	+ Probable polygalacturonase
PLN02155	PLN02155	5.0e-89	3	375	374	+ polygalacturonase
PLN02218	PLN02218	1.0e-92	2	372	377	+ polygalacturonase ADPG
pfam00295	Glyco_hydro_28	2.0e-103	31	365	335	+ Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.
PLN02188	PLN02188	1.0e-147	2	375	377	+ polygalacturonase/glycoside hydrolase family protein

Gene Ontology
GO Term	Description
GO:0004650	polygalacturonase activity
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
EMBL	CAN69218.1	0	1	370	53	421	hypothetical protein [Vitis vinifera]
EMBL	CAN69218.1	0	3	346	489	836	hypothetical protein [Vitis vinifera]
RefSeq	XP_002272193.1	0	1	376	53	427	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002314372.1	0	1	376	46	410	predicted protein [Populus trichocarpa]
RefSeq	XP_002516967.1	0	1	376	49	412	Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1bhe_A	7e-18	96	344	113	375	A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB	1ib4_B	0.000000000000008	94	359	74	339	A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB	1ib4_A	0.000000000000008	94	359	74	339	A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB	1ia5_A	0.000000000000008	94	359	74	339	A Chain A, Polygalacturonase From Aspergillus Aculeatus
PDB	2iq7_G	0.0000000000007	174	361	153	330	A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins

EST Download unfiltered results here

Hit	Length	Start	End	EValue
EE107069	251	12	262	0
CF207275	216	1	216	0
CO121523	287	84	368	0
GR442105	270	20	289	0
GR458020	270	20	289	0

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_014_00345.1	Aquca_014_00346.1	Aquca_017_00129.1	Aquca_007_00950.1	Aquca_001_00543.1
	Aquca_017_00127.1	Aquca_017_00128.2	Aquca_017_00128.1	Aquca_005_00082.1	Aquca_005_00081.1
	Aquca_019_00042.1	Aquca_019_00045.1	Aquca_003_00665.1	Aquca_012_00088.1	Aquca_017_00128.3
	Aquca_016_00178.1	Aquca_035_00221.1	Aquca_023_00138.1	Aquca_023_00144.1	Aquca_013_00893.1
	Aquca_019_00043.1
Arabidopsis lyrata	887420	329713	497387	318190	478122
	478120	494865	478121	870890	877955
	894135	486450	483504	903793	903792
	887757	887756	902380	471917	882030
	863554	870473	870469
Arabidopsis thaliana	AT1G02790.1	AT4G18180.1	AT3G14040.1	AT3G07850.1	AT5G48140.1
	AT3G07820.1	AT3G07830.1	AT3G07840.1	AT1G78400.1	AT2G43860.1
	AT2G15460.1	AT1G65570.1	AT3G59850.1	AT2G43870.1	AT2G43890.1
	AT1G05660.1	AT2G43880.1	AT1G05650.1	AT2G33160.1	AT1G17150.1
	AT2G15450.1	AT1G43090.1	AT1G43080.1	AT1G43100.1	AT2G15470.1
	AT2G40310.1	AT4G13760.1	AT2G26620.1
Brachypodium distachyon	Bradi1g36100.1	Bradi2g13740.1	Bradi3g20537.1	Bradi3g42120.1	Bradi3g07120.1
	Bradi2g57427.1	Bradi1g36110.1	Bradi1g36090.1	Bradi1g40990.1
Brassica rapa	Bra010872	Bra010873	Bra032585	Bra033347	Bra012613
	Bra030510	Bra001270	Bra040032	Bra001268	Bra035034
	Bra029682	Bra037431	Bra020716	Bra037509	Bra040035
	Bra040034	Bra001269	Bra029683	Bra025997	Bra004119
	Bra040790	Bra007483	Bra000332	Bra037678	Bra000331
	Bra004791	Bra037676	Bra004789	Bra037677	Bra030619
	Bra015446	Bra004790	Bra021830	Bra022928	Bra000183
	Bra000645	Bra014753	Bra004111	Bra017014	Bra037680.252.476
	Bra037680.252.476	Bra015210	Bra000327	Bra037680.58.254	Bra037680.58.254
	Bra037679
Carica papaya	evm.model.supercontig_151.22	evm.model.supercontig_12.214	evm.model.supercontig_50.155	evm.model.supercontig_48.188	evm.model.supercontig_1615.1
	evm.model.supercontig_64.7	evm.model.supercontig_64.6	evm.model.supercontig_250.6	evm.model.supercontig_250.7	evm.model.supercontig_14.219
	evm.model.supercontig_250.4	evm.model.supercontig_250.3	evm.model.supercontig_48.187	evm.model.supercontig_136.8	evm.model.supercontig_333.3
Capsella rubella	Carubv10012094m	Carubv10006680m	Carubv10015686m	Carubv10027711m	Carubv10015950m
	Carubv10015428m	Carubv10015541m	Carubv10021845m	Carubv10025146m	Carubv10007695m
	Carubv10022424m	Carubv10017416m	Carubv10024765m	Carubv10025465m	Carubv10024902m
	Carubv10024718m	Carubv10011292m	Carubv10012375m	Carubv10024590m	Carubv10024886m
	Carubv10022383m	Carubv10012276m	Carubv10016541m	Carubv10011686m
Citrus clementina	Ciclev10023712m	Ciclev10004345m.90.360	Ciclev10004345m.90.360	Ciclev10023493m	Ciclev10015423m
	Ciclev10004345m.455.780	Ciclev10004345m.455.780	Ciclev10017883m	Ciclev10006970m
Citrus sinensis	orange1.1g039959m	orange1.1g043757m	orange1.1g047315m	orange1.1g015254m	orange1.1g045893m
	orange1.1g042768m	orange1.1g043588m	orange1.1g048431m	orange1.1g045402m	orange1.1g041993m
	orange1.1g041973m	orange1.1g046411m	orange1.1g037377m	orange1.1g036371m	orange1.1g047296m
	orange1.1g047322m	orange1.1g027251m	orange1.1g027435m	orange1.1g040962m	orange1.1g036262m
Cucumis sativus	Cucsa.205370.1	Cucsa.205400.1	Cucsa.205410.1	Cucsa.388450.1	Cucsa.099870.1
	Cucsa.099870.2	Cucsa.100520.1	Cucsa.295580.1	Cucsa.124080.1	Cucsa.277280.1
	Cucsa.357430.1	Cucsa.252830.1	Cucsa.086360.1	Cucsa.237900.1	Cucsa.167020.1
	Cucsa.181040.1	Cucsa.042430.1	Cucsa.180960.1	Cucsa.100530.1	Cucsa.143900.1
	Cucsa.056540.1	Cucsa.138430.1	Cucsa.027780.1	Cucsa.138440.1	Cucsa.150180.1
	Cucsa.033910.1	Cucsa.114180.1	Cucsa.034590.1	Cucsa.291530.1	Cucsa.356350.1
	Cucsa.042440.1	Cucsa.071480.1	Cucsa.181130.1	Cucsa.205390.1
Eucalyptus grandis	Eucgr.H01890.1	Eucgr.H01889.1	Eucgr.L02033.1	Eucgr.H01088.1	Eucgr.B01575.1
	Eucgr.K00666.1	Eucgr.L01551.1	Eucgr.K00665.1	Eucgr.L01230.1	Eucgr.L03464.1
	Eucgr.L03153.1	Eucgr.K00662.1	Eucgr.A01068.1	Eucgr.A01065.1	Eucgr.C02251.1
	Eucgr.K00664.1	Eucgr.C02249.1	Eucgr.H03964.1	Eucgr.K00661.1	Eucgr.H00254.1
	Eucgr.L01949.1	Eucgr.L01371.1	Eucgr.H00252.1	Eucgr.L00823.1	Eucgr.H00255.1
	Eucgr.H00253.1	Eucgr.J01077.1	Eucgr.H00250.1	Eucgr.H01886.1	Eucgr.A00432.1
	Eucgr.L00826.1	Eucgr.F00633.1	Eucgr.F00632.1	Eucgr.F00634.1	Eucgr.H00251.1
	Eucgr.L03486.1	Eucgr.H05001.1
Fragaria vesca	mrna20228.1-v1.0-hybrid	mrna07055.1-v1.0-hybrid	mrna11078.1-v1.0-hybrid	mrna17351.1-v1.0-hybrid	mrna27787.1-v1.0-hybrid
	mrna14305.1-v1.0-hybrid	mrna21632.1-v1.0-hybrid	mrna23948.1-v1.0-hybrid	mrna01127.1-v1.0-hybrid	mrna21638.1-v1.0-hybrid
	mrna01445.1-v1.0-hybrid	mrna04439.1-v1.0-hybrid	mrna19487.1-v1.0-hybrid.66.392	mrna19487.1-v1.0-hybrid.66.392	mrna02341.1-v1.0-hybrid
	mrna19487.1-v1.0-hybrid.453.786	mrna19487.1-v1.0-hybrid.453.786	mrna03511.1-v1.0-hybrid	mrna17837.1-v1.0-hybrid	mrna10145.1-v1.0-hybrid
	mrna31694.1-v1.0-hybrid	mrna31695.1-v1.0-hybrid	mrna31696.1-v1.0-hybrid	mrna10147.1-v1.0-hybrid	mrna21420.1-v1.0-hybrid
	mrna10146.1-v1.0-hybrid	mrna07354.1-v1.0-hybrid	mrna14928.1-v1.0-hybrid	mrna21640.1-v1.0-hybrid	mrna20575.1-v1.0-hybrid
	mrna14927.1-v1.0-hybrid	mrna04504.1-v1.0-hybrid	mrna23301.1-v1.0-hybrid
Glycine max	Glyma15g16240.2	Glyma09g04640.2	Glyma02g01980.1	Glyma07g37440.1	Glyma14g00930.2
	Glyma14g00930.1	Glyma06g22890.1	Glyma04g30870.1	Glyma04g30920.2	Glyma04g30950.1
	Glyma18g22430.1	Glyma14g37030.1	Glyma06g22030.1	Glyma02g47720.1	Glyma08g15840.1
	Glyma03g24030.1	Glyma20g02840.1	Glyma15g13360.1	Glyma09g02460.2	Glyma07g34990.2
	Glyma01g18520.1	Glyma15g23310.1	Glyma09g10500.1	Glyma10g02120.2	Glyma15g42420.2
	Glyma15g16251.1	Glyma02g38980.2
Gossypium raimondii	Gorai.011G222300.1	Gorai.005G061900.1	Gorai.006G260500.1	Gorai.006G076800.1	Gorai.006G260500.2
	Gorai.007G167600.1	Gorai.001G193800.1	Gorai.010G091200.1	Gorai.006G016500.1	Gorai.011G193300.1
	Gorai.008G013400.1	Gorai.002G038500.1	Gorai.002G056900.1	Gorai.013G003900.1	Gorai.013G004900.1
	Gorai.013G004100.1	Gorai.011G222200.1	Gorai.013G004800.1	Gorai.011G222400.1	Gorai.012G120000.1
	Gorai.006G186600.1	Gorai.013G004000.1	Gorai.001G098100.1	Gorai.002G057100.1	Gorai.008G013400.3
	Gorai.008G013400.2
Linum usitatissimum	Lus10016823	Lus10003782	Lus10012489	Lus10039154	Lus10009606
	Lus10016824	Lus10009605	Lus10013784	Lus10013780	Lus10041059
	Lus10041058	Lus10043088	Lus10003001	Lus10002123	Lus10011419
	Lus10002125	Lus10011418	Lus10002124	Lus10002126	Lus10022530
	Lus10010584	Lus10008343	Lus10005304	Lus10026183	Lus10042483
	Lus10043087	Lus10026184	Lus10011417	Lus10006167
Malus domestica	MDP0000498407	MDP0000261960	MDP0000221383	MDP0000582836	MDP0000261959
	MDP0000263137	MDP0000286230	MDP0000223959	MDP0000307094	MDP0000859246
	MDP0000247298	MDP0000524522	MDP0000432773	MDP0000230434	MDP0000163058
	MDP0000263272	MDP0000235201	MDP0000190165	MDP0000853065	MDP0000516623
	MDP0000524876	MDP0000845685	MDP0000615684	MDP0000191453	MDP0000169108
	MDP0000273194	MDP0000260203	MDP0000845683	MDP0000176123	MDP0000247300
	MDP0000447149
Manihot esculenta	cassava4.1_032966m	cassava4.1_027290m	cassava4.1_029456m	cassava4.1_033867m	cassava4.1_031726m
	cassava4.1_031743m	cassava4.1_026629m	cassava4.1_027590m	cassava4.1_027889m	cassava4.1_031143m
	cassava4.1_025978m	cassava4.1_027894m	cassava4.1_026609m	cassava4.1_026297m	cassava4.1_030897m
	cassava4.1_022005m	cassava4.1_030943m	cassava4.1_031277m	cassava4.1_033821m	cassava4.1_025673m
	cassava4.1_026560m	cassava4.1_025157m	cassava4.1_021864m	cassava4.1_021791m	cassava4.1_030301m
	cassava4.1_028376m	cassava4.1_023138m	cassava4.1_020879m	cassava4.1_032576m	cassava4.1_028825m
	cassava4.1_026411m	cassava4.1_030991m	cassava4.1_030858m	cassava4.1_027487m	cassava4.1_024357m
	cassava4.1_034065m	cassava4.1_029037m	cassava4.1_029297m
Medicago truncatula	Medtr1g088160.1	Medtr2g058840.1	Medtr2g058670.1	Medtr2g058640.1	Medtr4g083660.1
	Medtr2g029170.1	Medtr2g049400.1	Medtr5g097860.1	Medtr5g063430.1
Mimulus guttatus	mgv1a007314m	mgv1a026431m	mgv1a007104m	mgv1a020057m	mgv1a019884m
	mgv1a023133m	mgv1a007528m	mgv1a007545m	mgv1a007538m	mgv1a007536m
	mgv1a007533m	mgv1a007768m	mgv1a023860m	mgv1a023303m	mgv1a025544m
	mgv1a018101m	mgv1a021627m	mgv1a019967m	mgv1a023780m	mgv1a025431m
	mgv1a022372m	mgv1a017666m	mgv1a023900m	mgv1a008791m	mgv1a012335m
Oryza sativa	LOC_Os06g31270.1	LOC_Os01g33300.1	LOC_Os06g40880.1	LOC_Os06g35370.1	LOC_Os06g35320.1
	LOC_Os06g40890.1	LOC_Os02g10300.1	LOC_Os01g43490.1	LOC_Os01g66710.1	LOC_Os11g14410.1
	LOC_Os08g23790.1	LOC_Os06g35300.1	LOC_Os11g14400.1
Panicum virgatum	Pavirv00035134m	Pavirv00034360m	Pavirv00055614m	Pavirv00040368m	Pavirv00022526m
	Pavirv00010684m	Pavirv00044011m	Pavirv00046761m	Pavirv00005355m	Pavirv00005092m
	Pavirv00069057m	Pavirv00058217m	Pavirv00024858m	Pavirv00015323m	Pavirv00028286m
	Pavirv00007502m	Pavirv00035135m	Pavirv00034359m	Pavirv00042409m	Pavirv00018555m
Phaseolus vulgaris	Phvul.003G107500.1	Phvul.009G251500.1	Phvul.007G218300.1	Phvul.008G286900.1	Phvul.004G097300.1
	Phvul.007G076900.1	Phvul.007G077000.1	Phvul.002G100400.1	Phvul.008G143500.1	Phvul.010G039000.1
	Phvul.007G076800.1	Phvul.007G076600.1	Phvul.005G039700.1	Phvul.007G076400.1
Picea abies	MA_13282g0010
Populus trichocarpa	Potri.010G007300.1	Potri.010G011100.1	Potri.010G011200.1	Potri.002G202100.1	Potri.002G202200.1
	Potri.009G169100.1	Potri.009G038100.1	Potri.019G067200.1	Potri.019G067100.1	Potri.019G067000.1
	Potri.019G066800.1	Potri.019G066700.1	Potri.014G162300.1	Potri.007G035800.1	Potri.T177500.1
	Potri.T170900.1	Potri.010G177600.1	Potri.T171000.1	Potri.010G248200.1	Potri.017G004500.1
	Potri.017G003500.1	Potri.007G144200.1	Potri.007G144400.1	Potri.017G005300.1	Potri.017G005600.1
	Potri.017G005900.1	Potri.007G144100.1	Potri.T075100.1	Potri.007G144500.1	Potri.008G010700.1
	Potri.017G006200.1	Potri.017G005800.1	Potri.017G004700.1	Potri.017G006700.1	Potri.007G145300.1
	Potri.017G006500.1	Potri.017G006400.1	Potri.007G144400.2	Potri.019G066800.2	Potri.001G377700.1
Prunus persica	ppa018682m	ppa016722m	ppa026115m	ppa015208m	ppa015568m
	ppa019563m	ppa018308m	ppa025464m	ppa021953m	ppa007271m
	ppa025787m	ppa006839m	ppa006857m	ppa025098m	ppa016502m
	ppa018149m	ppa020072m	ppa017135m
Ricinus communis	29726.m004090	29769.m00466	29986.m001649	29769.m000461	30042.m000469
	29738.m001005	30042.m000468	30042.m000470	30042.m000467	30042.m000474
	30042.m000475	30042.m000476	30042.m000472	30042.m000473
Setaria italica	Si007823m	Si015137m	Si015477m	Si004860m	Si017418m
	Si006535m	Si004836m	Si005178m	Si006532m	Si028218m
	Si039581m	Si008011m
Sorghum bicolor	Sb10g024020.1	Sb07g016970.1	Sb04g006610.1	Sb07g025130.1	Sb03g021050.1
	Sb10g003580.1	Sb03g042350.1	Sb03g028380.1	Sb10g024010.1	Sb10g021590.1
	Sb10g024000.1
Thellungiella halophila	Thhalv10007721m	Thhalv10027030m	Thhalv10020501m	Thhalv10004361m	Thhalv10020916m
	Thhalv10020872m	Thhalv10005587m	Thhalv10020866m	Thhalv10018650m	Thhalv10001794m
	Thhalv10018672m	Thhalv10006416m	Thhalv10001491m	Thhalv10001486m	Thhalv10001483m
	Thhalv10001484m	Thhalv10007830m	Thhalv10028169m	Thhalv10017763m	Thhalv10027416m
	Thhalv10009641m	Thhalv10017738m	Thhalv10009339m
Vitis vinifera	GSVIVT01035103001	GSVIVT01028044001	GSVIVT01035102001	GSVIVT01030023001	GSVIVT01030017001
	GSVIVT01020792001	GSVIVT01020794001	GSVIVT01012232001	GSVIVT01030018001	GSVIVT01030030001
	GSVIVT01004006001	GSVIVT01004007001	GSVIVT01038241001	GSVIVT01038243001	GSVIVT01006443001
	GSVIVT01023861001.76.261	GSVIVT01023861001.76.261	GSVIVT01020791001	GSVIVT01030031001

CAZyme Information