y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.256180.2 |
Family | PL1 |
Protein Properties | Length: 447 Molecular Weight: 48902.2 Isoelectric Point: 7.0747 |
Chromosome | Chromosome/Scaffold: 02229 Start: 3850745 End: 3855889 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 160 | 365 | 0 |
IQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWID HNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYAA |
Full Sequence |
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Protein Sequence Length: 447 Download |
MAMAESGKWI RLILLVVFML FVGAIARAPK EIPEIENGGT EKLQSSSNST MAVRLDEAKD 60 LGNEHAVDNP EEIAAMVDII RNATARRELG FFSCGTGNPI DDCWRCDPNW QQNRKRLADC 120 GIGFGRNAIG GRDGRFYVVT DSGDDNPVNP KPGTLRHAVI QDEPLWIVFK RDMVIQLKQE 180 LIMNSFKTID ARGTNVHIAN GACLTIQFVT NVIVHGLNIH DCKPTGNAMV RSSPNHVGWR 240 TIADGDAISI FGSSHIWIDH NSLSNCADGL VDAVMGSTAI TISNNYFTHH NEVMLLGHSD 300 SYVRDKLMQV TIAYNHFGEG LIQRMPRCRH GYFHVVNNDY THWEMYAIGG SANPTINSQG 360 NRYAAPTNPF AKEVTKRVET SESEWKGWNW RSEGDLLLNG AFFIPSGAGA SSSYARASSL 420 GAKSSSMVGT ITSNAGALSC RRGHAC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-27 | 185 | 378 | 207 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-73 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-80 | 172 | 366 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 31 | 446 | 29 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 19 | 446 | 1 | 425 | pectate lyase [Prunus persica] |
EMBL | CBI33346.1 | 0 | 3 | 446 | 1 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 1 | 446 | 1 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 3 | 446 | 1 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 98 | 439 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 98 | 439 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 167 | 363 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 243 | 364 | 187 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000003 | 188 | 340 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |