| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.258550.1 |
| Family | GH28 |
| Protein Properties | Length: 494 Molecular Weight: 53776.4 Isoelectric Point: 6.0151 |
| Chromosome | Chromosome/Scaffold: 02229 Start: 5461041 End: 5467564 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 96 | 445 | 0 |
| TDDGGAQLYVPAGKWLTGSFNLTSHFTLFLHQDAVLLASQDPNEWPVVEPLPSYGHGRDTSGGRYISLIFGTNLTDVVITGNNGTIDGQGDRWWQLFHQG KLKYTRPYLIELMYSSDIQISSLTLLNSPAWNVHPVYSSNILIQGITIIAPVRSPNTDGINPDSCTNVRIEDCYIVSGDDCVAVKSGWDEYGISFGLPTK QLVVRRLTCISPTSAVIALGSEMSGGIEDVRAEDIVAIDSESGVRIKTGIGRGGYVKDIYVRRMTMHTMKWAFWMTGDYGSHADKNYDPHALPVIQGINY KDMVVENATMAARLEGISGDTFTDICISNVTIGLAPKAKKQPWTCTDIEG | |||
| Full Sequence |
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| Protein Sequence Length: 494 Download |
| MPMEKLYKNP IKAQVMKMVI LGVIMAAALM GEVEGRKGKV KKGKKAKILE GNGIEYGAIS 60 CRAHTASITE FGGVGDGVTS NTKAFQAAVE QLSQYTDDGG AQLYVPAGKW LTGSFNLTSH 120 FTLFLHQDAV LLASQDPNEW PVVEPLPSYG HGRDTSGGRY ISLIFGTNLT DVVITGNNGT 180 IDGQGDRWWQ LFHQGKLKYT RPYLIELMYS SDIQISSLTL LNSPAWNVHP VYSSNILIQG 240 ITIIAPVRSP NTDGINPDSC TNVRIEDCYI VSGDDCVAVK SGWDEYGISF GLPTKQLVVR 300 RLTCISPTSA VIALGSEMSG GIEDVRAEDI VAIDSESGVR IKTGIGRGGY VKDIYVRRMT 360 MHTMKWAFWM TGDYGSHADK NYDPHALPVI QGINYKDMVV ENATMAARLE GISGDTFTDI 420 CISNVTIGLA PKAKKQPWTC TDIEGITSQV TPPPCDLLPD QGEEKITTCK FPEDNLPIDS 480 VQLKKCSYQF SHA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-19 | 68 | 361 | 307 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-22 | 65 | 407 | 355 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-28 | 154 | 443 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 5.0e-28 | 68 | 365 | 309 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 8.0e-61 | 49 | 361 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 37 | 492 | 39 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| RefSeq | XP_002277736.1 | 0 | 37 | 492 | 27 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002278930.1 | 0 | 54 | 488 | 41 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 42 | 492 | 21 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 3 | 492 | 1 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 64 | 427 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 64 | 427 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 64 | 427 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 64 | 427 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 1e-16 | 60 | 416 | 151 | 545 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY257045 | 327 | 109 | 435 | 0 |
| ES810566 | 342 | 153 | 494 | 0 |
| CF512873 | 307 | 182 | 488 | 0 |
| EY810524 | 297 | 98 | 394 | 0 |
| DW138823 | 316 | 84 | 399 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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