| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.277280.1 |
| Family | GH28 |
| Protein Properties | Length: 379 Molecular Weight: 40953 Isoelectric Point: 8.4234 |
| Chromosome | Chromosome/Scaffold: 02601 Start: 492593 End: 494036 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 26 | 355 | 0 |
| KGACASTSRSKVLIPKGIYLLSQSNLKGPCKSSIEIQVQGTLQAPPDPKGDGLVILEYIDQLTLSGTGVFDGQGKAGWEKNDCHKKKICTKLPMTLKFNF VTNSIVKDITSLDSKNFHINLLGCKNITFEHVTISAPENSPNTDGIHISSSEQIRILNTKISTGDDCVSVGDSNKDITIRDVTCGPGHGISIGSLGKYTK EKAVEGVWVTKCKLIKTTNGVRIKTWPDSAVKYSASDMHFEDIEMIDVSNPILIDQEYCPWNQCNRKIPSSIKISKVSFKNIRGTTVTPVAVKLVCSKSI PCEAVEVADIDLKYNGNKGSITSQCANVKP | |||
| Full Sequence |
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| Protein Sequence Length: 379 Download |
| QSVFDVTRYG AKPNTDITHA LLNAWKGACA STSRSKVLIP KGIYLLSQSN LKGPCKSSIE 60 IQVQGTLQAP PDPKGDGLVI LEYIDQLTLS GTGVFDGQGK AGWEKNDCHK KKICTKLPMT 120 LKFNFVTNSI VKDITSLDSK NFHINLLGCK NITFEHVTIS APENSPNTDG IHISSSEQIR 180 ILNTKISTGD DCVSVGDSNK DITIRDVTCG PGHGISIGSL GKYTKEKAVE GVWVTKCKLI 240 KTTNGVRIKT WPDSAVKYSA SDMHFEDIEM IDVSNPILID QEYCPWNQCN RKIPSSIKIS 300 KVSFKNIRGT TVTPVAVKLV CSKSIPCEAV EVADIDLKYN GNKGSITSQC ANVKPIISGK 360 QNPRICAEAA PVDAPSID* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-73 | 2 | 354 | 364 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-75 | 1 | 366 | 377 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-76 | 3 | 366 | 372 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-106 | 29 | 354 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 9.0e-120 | 4 | 367 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 3 | 366 | 30 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 3 | 366 | 30 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-18 | 37 | 283 | 65 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.0000000000003 | 96 | 353 | 85 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.0000000000003 | 96 | 353 | 85 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.0000000000003 | 96 | 353 | 85 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1hg8_A | 0.0000000000009 | 167 | 310 | 165 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CU617067 | 282 | 6 | 282 | 0 |
| GR463354 | 273 | 95 | 367 | 0 |
| GR462194 | 275 | 76 | 350 | 0 |
| CO101156 | 284 | 8 | 285 | 0 |
| CO101142 | 284 | 8 | 285 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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