| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.286150.1 |
| Family | GH28 |
| Protein Properties | Length: 531 Molecular Weight: 58302.8 Isoelectric Point: 8.7182 |
| Chromosome | Chromosome/Scaffold: 02653 Start: 2288984 End: 2292209 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 139 | 483 | 0 |
| ASCKVAASTFIVPSKYVFLVGPISFSGPYCQPDIVFQLDGTIIAPTDFKVWGKGLLQWLQFTKLMGLTIQGNGVIDGRGSVWWQEISPYDDPIDDEFKLL IPLNSTVQEKPPPPARSELVGKMPRIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVLVHDFNVSSPGDSLNTDGIHLQNSKDVLIYSSTLSCGD DCISIQTGCSNVYIHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVIMHNTMNGVRIKTWQGGLGFVQGVLFSNIQVSEVKIPIVIDQFYCDKAKCSNQ TAAVALSGINYERIRGTYTVKPVHFACSDNLPCTDISLTAIELKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 531 Download |
| MYMKMEGISF RGLTFMLAVA FLVWSSSLEG CHGKVRSKHY WRKNRVASPA LYSKKGKAHS 60 HGGSHKGNHH GSASKTKPRP SHKTPQPLPR PVTKPKPNIP RSPPPQKEGH SIMFNVLDFG 120 AKGDGKTDDT KAFQDTWTAS CKVAASTFIV PSKYVFLVGP ISFSGPYCQP DIVFQLDGTI 180 IAPTDFKVWG KGLLQWLQFT KLMGLTIQGN GVIDGRGSVW WQEISPYDDP IDDEFKLLIP 240 LNSTVQEKPP PPARSELVGK MPRIKPTALR FYGSFNVTVT GITIQNSPQC HLKFDNCIGV 300 LVHDFNVSSP GDSLNTDGIH LQNSKDVLIY SSTLSCGDDC ISIQTGCSNV YIHNVNCGPG 360 HGISIGSLGK DNTKACVSNI TVRDVIMHNT MNGVRIKTWQ GGLGFVQGVL FSNIQVSEVK 420 IPIVIDQFYC DKAKCSNQTA AVALSGINYE RIRGTYTVKP VHFACSDNLP CTDISLTAIE 480 LKPLQELYHL YSAYCWQTFG ELRTPTVPPI DCLQIGKPSS NQIQYDFDSC * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-79 | 111 | 482 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-84 | 143 | 481 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 2.0e-84 | 114 | 481 | 373 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-90 | 115 | 482 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-104 | 113 | 509 | 402 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 3 | 530 | 2 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_564758.2 | 0 | 6 | 530 | 5 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 5 | 530 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 3 | 530 | 2 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 5 | 530 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-22 | 190 | 437 | 96 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-20 | 186 | 481 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-20 | 186 | 481 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-20 | 186 | 481 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-20 | 186 | 481 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
