| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.286160.1 |
| Family | GH28 |
| Protein Properties | Length: 470 Molecular Weight: 51047.4 Isoelectric Point: 4.6386 |
| Chromosome | Chromosome/Scaffold: 02653 Start: 2298233 End: 2300741 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 91 | 420 | 0 |
| TACSTSKSVLLVPKDKTYLVNATTFKGPCKDGMVIQIEGTIVAPDEPELWDPKFPRQWLEFTKLNAATFQGDGVIDGSGEKWWAESCKKNKSRPCKGAPT ALTIDSSSNIRVKGLTIQNSQQMHFTIARSETVRITGVRVSAPGDSPNTDGIHITQSTNVVVQNCKISTGDDCISIVNASSGIKMKGISCGPGHGISIGS LGKDNSTGIVTKVVLDTAYLRETTNGVRIKTWQGGSGYVRAVRFENVRMEDVENPIIIDQFYCDSPTTCESQTSAVKISQIMYRNISGTTTSKNAMKFAC SDSVPCSNIILSNVNLEKTDGTVETYCHAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 470 Download |
| MDKLFLLSLL GLFIIAYGVS GAFVSDSDID MIKELESFDI EEEDDDDVYS YTVPVWRSER 60 GSKILMNVDS FDAIGDGVTD DTMAFRKAWE TACSTSKSVL LVPKDKTYLV NATTFKGPCK 120 DGMVIQIEGT IVAPDEPELW DPKFPRQWLE FTKLNAATFQ GDGVIDGSGE KWWAESCKKN 180 KSRPCKGAPT ALTIDSSSNI RVKGLTIQNS QQMHFTIARS ETVRITGVRV SAPGDSPNTD 240 GIHITQSTNV VVQNCKISTG DDCISIVNAS SGIKMKGISC GPGHGISIGS LGKDNSTGIV 300 TKVVLDTAYL RETTNGVRIK TWQGGSGYVR AVRFENVRME DVENPIIIDQ FYCDSPTTCE 360 SQTSAVKISQ IMYRNISGTT TSKNAMKFAC SDSVPCSNII LSNVNLEKTD GTVETYCHAA 420 QGFGYGVVHP SADCLTSSDN NFASSDQTQV LELETVQLST EQHIVHTEL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-88 | 62 | 411 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 6.0e-96 | 66 | 452 | 395 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-96 | 94 | 407 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-117 | 66 | 430 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-150 | 57 | 438 | 384 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA88472.1 | 0 | 26 | 430 | 26 | 430 | polygalacturonase [Cucumis sativus] |
| RefSeq | XP_002299032.1 | 0 | 1 | 469 | 1 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317091.1 | 0 | 31 | 469 | 1 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328587.1 | 0 | 1 | 447 | 1 | 445 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525360.1 | 0 | 1 | 469 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 161 | 352 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-19 | 165 | 417 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-19 | 165 | 417 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-19 | 165 | 417 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-19 | 165 | 417 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
