| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.286160.3 |
| Family | GH28 |
| Protein Properties | Length: 340 Molecular Weight: 36904.9 Isoelectric Point: 5.0768 |
| Chromosome | Chromosome/Scaffold: 02653 Start: 2298233 End: 2300741 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 91 | 323 | 0 |
| TACSTSKSVLLVPKDKTYLVNATTFKGPCKDGMVIQIEGTIVAPDEPELWDPKFPRQWLEFTKLNAATFQGDGVIDGSGEKWWAESCKKNKSRPCKGAPT ALTIDSSSNIRVKGLTIQNSQQMHFTIARSETVRITGVRVSAPGDSPNTDGIHITQSTNVVVQNCKISTGDDCISIVNASSGIKMKGISCGPGHGISIGS LGKDNSTGIVTKVVLDTAYLRETTNGVRIKTWQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 340 Download |
| MDKLFLLSLL GLFIIAYGVS GAFVSDSDID MIKELESFDI EEEDDDDVYS YTVPVWRSER 60 GSKILMNVDS FDAIGDGVTD DTMAFRKAWE TACSTSKSVL LVPKDKTYLV NATTFKGPCK 120 DGMVIQIEGT IVAPDEPELW DPKFPRQWLE FTKLNAATFQ GDGVIDGSGE KWWAESCKKN 180 KSRPCKGAPT ALTIDSSSNI RVKGLTIQNS QQMHFTIARS ETVRITGVRV SAPGDSPNTD 240 GIHITQSTNV VVQNCKISTG DDCISIVNAS SGIKMKGISC GPGHGISIGS LGKDNSTGIV 300 TKVVLDTAYL RETTNGVRIK TWQVRITNLT TIFILSLHG* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-63 | 67 | 323 | 260 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-64 | 94 | 323 | 230 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-66 | 66 | 323 | 260 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-82 | 66 | 323 | 261 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-102 | 57 | 323 | 268 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA88472.1 | 0 | 26 | 323 | 26 | 323 | polygalacturonase [Cucumis sativus] |
| RefSeq | XP_002299032.1 | 0 | 1 | 323 | 1 | 320 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317091.1 | 0 | 31 | 323 | 1 | 291 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328587.1 | 0 | 1 | 323 | 1 | 321 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525360.1 | 0 | 1 | 324 | 1 | 321 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.00000000000003 | 121 | 321 | 41 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000003 | 121 | 321 | 41 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000003 | 121 | 321 | 41 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000003 | 121 | 321 | 41 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.00000000000003 | 121 | 321 | 41 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
