y
Basic Information | |
---|---|
Species | Cucumis sativus |
Cazyme ID | Cucsa.286260.1 |
Family | GH28 |
Protein Properties | Length: 464 Molecular Weight: 50595.9 Isoelectric Point: 9.6038 |
Chromosome | Chromosome/Scaffold: 02653 Start: 2357001 End: 2360795 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 96 | 427 | 0 |
KAACEIPGATLEIPSQYKFLIKPITLNGPCMAQFVLQIDGAVLAPPKVSSWPKSSLFQWLNFKWLHNFTIQGSGTVNGQGFNWWTLNNKKKLKHISDMKP TALRFYSSYNVTVRDITIINSPQCHLKFDNSGTVKIDNITISSPENSPNTDGIHLQNTRDVEIQHSNIGCGDDCVSIQTGCSNIHIHHINCGPGHGISLG GLGKDKSAACVSNIVVENISIQNTLSGVRIKTWQGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQPIHLACS SQIPCVDVDLIDIQLKPSSESRGFQNSICWNS |
Full Sequence |
---|
Protein Sequence Length: 464 Download |
MKQRRKKLTL SLFLFLVVSL LVSSSVVRVE ARKQYHNKKS KHQKQKGAGN GHGSGPAPTP 60 LPYYNQSQST IFNILSFGAK GNGVSDDSKA LLAAWKAACE IPGATLEIPS QYKFLIKPIT 120 LNGPCMAQFV LQIDGAVLAP PKVSSWPKSS LFQWLNFKWL HNFTIQGSGT VNGQGFNWWT 180 LNNKKKLKHI SDMKPTALRF YSSYNVTVRD ITIINSPQCH LKFDNSGTVK IDNITISSPE 240 NSPNTDGIHL QNTRDVEIQH SNIGCGDDCV SIQTGCSNIH IHHINCGPGH GISLGGLGKD 300 KSAACVSNIV VENISIQNTL SGVRIKTWQG GIGSVKNVSF SNIQVSDVKV PIMIDQYYCD 360 KSKCKNQTGA VAISGITYDQ IIGSYSVQPI HLACSSQIPC VDVDLIDIQL KPSSESRGFQ 420 NSICWNSYGK SQAPLLPTSI DSCLRRGGGA VRRIARSHDY VCY* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-69 | 104 | 424 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-69 | 67 | 431 | 372 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-73 | 71 | 431 | 368 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-76 | 70 | 437 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-96 | 71 | 443 | 376 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 30 | 462 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 30 | 462 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 32 | 462 | 31 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 72 | 451 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 3 | 462 | 2 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-28 | 162 | 361 | 110 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-19 | 174 | 396 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-19 | 174 | 396 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-19 | 174 | 396 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-19 | 174 | 396 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |