| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.286260.2 |
| Family | GH28 |
| Protein Properties | Length: 339 Molecular Weight: 37001 Isoelectric Point: 8.4828 |
| Chromosome | Chromosome/Scaffold: 02653 Start: 2355221 End: 2360795 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 4 | 302 | 0 |
| FVLQIDGAVLAPPKVSSWPKSSLFQWLNFKWLHNFTIQGSGTVNGQGFNWWTLNNKKKLKHISDMKPTALRFYSSYNVTVRDITIINSPQCHLKFDNSGT VKIDNITISSPENSPNTDGIHLQNTRDVEIQHSNIGCGDDCVSIQTGCSNIHIHHINCGPGHGISLGGLGKDKSAACVSNIVVENISIQNTLSGVRIKTW QGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKSKCKNQTGAVAISGITYDQIIGSYSVQPIHLACSSQIPCVDVDLIDIQLKPSSESRGFQNSICWNS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 339 Download |
| MAQFVLQIDG AVLAPPKVSS WPKSSLFQWL NFKWLHNFTI QGSGTVNGQG FNWWTLNNKK 60 KLKHISDMKP TALRFYSSYN VTVRDITIIN SPQCHLKFDN SGTVKIDNIT ISSPENSPNT 120 DGIHLQNTRD VEIQHSNIGC GDDCVSIQTG CSNIHIHHIN CGPGHGISLG GLGKDKSAAC 180 VSNIVVENIS IQNTLSGVRI KTWQGGIGSV KNVSFSNIQV SDVKVPIMID QYYCDKSKCK 240 NQTGAVAISG ITYDQIIGSY SVQPIHLACS SQIPCVDVDL IDIQLKPSSE SRGFQNSICW 300 NSYGKSQAPL LPTSIDSCLR RGGGAVRRIA RSHDYVCY* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-53 | 6 | 285 | 284 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-54 | 6 | 306 | 306 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-59 | 6 | 312 | 310 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-63 | 6 | 299 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-73 | 2 | 318 | 319 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_189293.1 | 0 | 3 | 337 | 123 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266099.1 | 0 | 1 | 337 | 136 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312682.1 | 0 | 1 | 337 | 136 | 466 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315680.1 | 0 | 1 | 326 | 55 | 378 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527898.1 | 0 | 1 | 337 | 137 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-28 | 37 | 236 | 110 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-20 | 49 | 271 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-20 | 49 | 271 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-20 | 49 | 271 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-20 | 49 | 271 | 83 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EH768189 | 241 | 2 | 242 | 0 |
| GO844129 | 282 | 4 | 275 | 0 |
| DR581859 | 246 | 67 | 312 | 0 |
| ES800057 | 328 | 2 | 300 | 0 |
| FE695613 | 245 | 65 | 309 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
