Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.288760.2 |
Family | CE8 |
Protein Properties | Length: 387 Molecular Weight: 42685 Isoelectric Point: 9.5573 |
Chromosome | Chromosome/Scaffold: 02698 Start: 288346 End: 290574 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 90 | 380 | 0 |
VAKNPASGDFTSIQDAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIEGAGAEKTIIQWGDTAQTPGSNGQPMGTYNSATFAVNSPYFIAKNITF KNTTPVPAPGAIGKQAVAFRISADTAAFFGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFSF VKCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGDGASFAGRVSWSRELTDEEAKPFISLTFIDG |
Full Sequence |
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Protein Sequence Length: 387 Download |
MSKLHPHPSL LLLLLLLLFL LLSLSFTQTH CHTKGLKPKK SSKNFLPNNS TKTQFSEQQF 60 LKWVKFVGSL RHSVFKTAKN KLFPSFTLHV AKNPASGDFT SIQDAIDSLP FINLVRVVIK 120 VHAGVYTEKV NIPPLKSFIT IEGAGAEKTI IQWGDTAQTP GSNGQPMGTY NSATFAVNSP 180 YFIAKNITFK NTTPVPAPGA IGKQAVAFRI SADTAAFFGC RFLGAQDTLY DHLGRHYYKD 240 CYIEGSVDFI FGNGLSLFEG CHVHAIAQYT GALTAQGRSS LLEDTGFSFV KCKVTGSGAL 300 YLGRAWGPFS RVVFAYTYMD NIIIPKGWYN WGDPNREMTV FYGQYKCTGD GASFAGRVSW 360 SRELTDEEAK PFISLTFIDG SEWIKI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 1.0e-111 | 98 | 385 | 296 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-116 | 97 | 385 | 289 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-118 | 96 | 384 | 290 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-120 | 87 | 384 | 300 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 38 | 386 | 349 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 14 | 386 | 10 | 379 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 74 | 386 | 1 | 313 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 27 | 386 | 24 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 16 | 386 | 11 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 1 | 386 | 1 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 90 | 385 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6.02558e-44 | 90 | 385 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-25 | 90 | 379 | 35 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 1e-19 | 90 | 372 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 1e-19 | 90 | 372 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |