Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.298380.1 |
Family | GH10 |
Protein Properties | Length: 535 Molecular Weight: 60772.5 Isoelectric Point: 7.1401 |
Chromosome | Chromosome/Scaffold: 02901 Start: 31126 End: 33538 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 182 | 440 | 0 |
KKPNFPFGAGMNYHILLSKEYQQWFASRFAYATFTNELKWYSTENVQGQENYTVPDAMLEFSQQHGISVRGHNIFWDSPKYQPEWVKSLSPQDLKEAADR RINSVVKRYSGKFIHWDVVNENVHFRFFEDKLGENASAEYFNIAHKLDNKTLLFMNEYNIMEHDYKNTATPADFRKKLLEILSYPGNENIPAGIGLQGTF GPDAPNLPYMRSALDLLGSTGYPIWITEVFVHQTPNQAQYYEEVLREGYAHPAVKGIIT |
Full Sequence |
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Protein Sequence Length: 535 Download |
MIVNPEFNNG IEGWKVFGGG RIRQGWLKHG NLINTFIVAH NRTSPRDTFH QLLHLQRHYL 60 YTFSAWVRLS EGNAPVGVVF RNSKGGQILH GGETMAKHGC WSLLKGGIVS NFTGQAEIIF 120 ESTNTEVEIW VDNVSLHPFT KEQWRSHQDE SINKVRKSKV RLQITQADNS KLAGAKVLID 180 QKKPNFPFGA GMNYHILLSK EYQQWFASRF AYATFTNELK WYSTENVQGQ ENYTVPDAML 240 EFSQQHGISV RGHNIFWDSP KYQPEWVKSL SPQDLKEAAD RRINSVVKRY SGKFIHWDVV 300 NENVHFRFFE DKLGENASAE YFNIAHKLDN KTLLFMNEYN IMEHDYKNTA TPADFRKKLL 360 EILSYPGNEN IPAGIGLQGT FGPDAPNLPY MRSALDLLGS TGYPIWITEV FVHQTPNQAQ 420 YYEEVLREGY AHPAVKGIIT FAGPESVGFT TLPLVDMNFK NTAAGDVVDK LLGEWKSPSF 480 EITADDEGFV DASLFHGDYN VRVQHPRTNS SICVSIKVTE EATHRTLKLQ LPHN* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 1.0e-33 | 181 | 440 | 283 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 9.0e-54 | 178 | 444 | 285 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-71 | 219 | 468 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 1 | 531 | 53 | 579 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 1 | 531 | 47 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313183.1 | 0 | 22 | 531 | 1 | 506 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 1 | 523 | 21 | 539 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 1 | 531 | 36 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ta3_B | 9e-23 | 188 | 410 | 17 | 239 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1nq6_A | 5e-22 | 188 | 438 | 15 | 265 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1x_A | 5e-19 | 188 | 459 | 18 | 288 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1w_A | 5e-19 | 188 | 459 | 18 | 288 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 1e-18 | 188 | 459 | 18 | 288 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV141191 | 248 | 179 | 426 | 0 |
ES830806 | 293 | 67 | 357 | 0 |
CV887102 | 262 | 270 | 531 | 0 |
EX266128 | 281 | 195 | 475 | 0 |
EX266128 | 55 | 477 | 529 | 3.8 |
Sequence Alignments (This image is cropped. Click for full image.) |
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