| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.303830.1 |
| Family | GH28 |
| Protein Properties | Length: 446 Molecular Weight: 48638.2 Isoelectric Point: 7.4338 |
| Chromosome | Chromosome/Scaffold: 02951 Start: 1629441 End: 1632851 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 419 | 0 |
| RGGTLLYIPPGVYLTETFNLTSHMTLYLAKGAVIKAVQDSSNWPVIAPLPSYGRGRERPGGRYISLIHGDGVHDVVITGENGTIDGQGDAWWNMWRTGTL KYTRPSLVEFVNSYNIIISNVMFLNSPFWNIHPVYCRNVVVRYVTILAPRDSPNTDGVDPDSSNNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRCSYDI TIRRISGSSPFAGVAVGSEASGGVANVLAEHLNFYDMGVGINIKTNIGRGGFIKNITVSNVYMENSRKGLKIAGDAGDHPDDKFDPNALPIVKDITIKNI WGVNVQQAGSIYGLRDSPFTGICLSNINLRGATRPRSVPWTCSYVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 446 Download |
| MLPFPLFIFI FFTTLFPSPL AVADLTTCSG IVPMKYRNDK ISIADFGGIG DGRTLNTRAF 60 RAAIYRIQHL RRRGGTLLYI PPGVYLTETF NLTSHMTLYL AKGAVIKAVQ DSSNWPVIAP 120 LPSYGRGRER PGGRYISLIH GDGVHDVVIT GENGTIDGQG DAWWNMWRTG TLKYTRPSLV 180 EFVNSYNIII SNVMFLNSPF WNIHPVYCRN VVVRYVTILA PRDSPNTDGV DPDSSNNVCI 240 EDSYISTGDD LVAVKSGWDE YGIAYGRCSY DITIRRISGS SPFAGVAVGS EASGGVANVL 300 AEHLNFYDMG VGINIKTNIG RGGFIKNITV SNVYMENSRK GLKIAGDAGD HPDDKFDPNA 360 LPIVKDITIK NIWGVNVQQA GSIYGLRDSP FTGICLSNIN LRGATRPRSV PWTCSYVSGA 420 ASLVSPWPCS ELTSTDQDGL CSDNF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-21 | 46 | 268 | 231 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 4.0e-21 | 38 | 434 | 405 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-25 | 41 | 405 | 384 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-29 | 139 | 422 | 288 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-43 | 42 | 402 | 386 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 1 | 445 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 1 | 442 | 1 | 444 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 1 | 445 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 34 | 445 | 1 | 412 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 12 | 445 | 13 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.00386e-43 | 40 | 405 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.00386e-43 | 40 | 405 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.00386e-43 | 40 | 405 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.00386e-43 | 40 | 405 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-18 | 84 | 372 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
