Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.308710.1 |
Family | PL1 |
Protein Properties | Length: 504 Molecular Weight: 54543 Isoelectric Point: 6.409 |
Chromosome | Chromosome/Scaffold: 02978 Start: 709962 End: 714277 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 128 | 328 | 0 |
LWIIFSADMTIRLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNVHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLS YCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWQMYAIGGSAQPTINSQGNRYT A |
Full Sequence |
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Protein Sequence Length: 504 Download |
MVASSISCVS SSSFNLTLPH QHPDPDSVAD ELQRTVNASV WRRQMLSIES KDQTFSCLTG 60 NPIDDCWRCD PNWAANRQRL ADCGIGFGRD AMGGKGGKIY IVTDSSDLDP TNPTPGTLRH 120 AVIQFEPLWI IFSADMTIRL KYELIINSFK TIDGRGANVH ITGGGCITIQ YVSNVIIHNV 180 HVHHCKPSGN ANIRSTPTHV GHRGLSDGDG ISIFSSRKIW IDHCSLSYCT DGLIDAIMGS 240 TGITISNSYF SHHDEVMLLG HDDRYVQDSG MQVTIAFNHF GEALVQRMPR CRHGYIHVVN 300 NDFTAWQMYA IGGSAQPTIN SQGNRYTAPV DPNAKEVTRR LDAAETEWAG WNWRTDGDIL 360 VNGAFFVPSG AGLSTQYGKA SSVEPKSVAL INQLTMNAGV LGAPRYNGGE GIVYPGFSGG 420 SGGNGDEGYG GNTVINNSPI YENGGGSGGY GNGNGNDDYF GMIFKANGHR TFPIFSSLNY 480 LCTLLIIFLL YIVTNYSSTL LSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-24 | 93 | 324 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-58 | 141 | 326 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-67 | 135 | 329 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 7 | 429 | 35 | 462 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 13 | 464 | 25 | 455 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 9 | 405 | 22 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 14 | 427 | 24 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 9 | 473 | 23 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 92 | 317 | 22 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000002 | 86 | 399 | 22 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000002 | 86 | 399 | 22 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |