Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.312070.1 |
Family | PL4 |
Protein Properties | Length: 643 Molecular Weight: 73467.8 Isoelectric Point: 5.0335 |
Chromosome | Chromosome/Scaffold: 02995 Start: 1560279 End: 1567307 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 620 | 0 |
ILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTPGTTGTFDEMRGREFEVMVQNEEQIELSFKRNYSFKDKA VPLNIDKRFIMLRNSSGFYSYAIYEHMREWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKY QYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKVSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWED AKTQMSKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNEEKMPATDAYVGLAAPGDVGSWQTEKKGYQFWTKTDADGSFSIEHVRIGDYNLYAWV PGFIGDYRYDVLINVSSGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYIPDPDPKYINKLYINHPDRFRQYGLWEKYAELHPDADLVYSVGVSDYTK DWFFAHVNRKRNDGSHLATTWEIKFRLDNIIDKGVTYILRVALATANVAELQIQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEG ENTIFLSQIINNSSFN |
Full Sequence |
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Protein Sequence Length: 643 Download |
MANEILQLDI QDHHVVMDNG ILQVTLSKPD GNVTGIKYNS IDNVLEVDDK EAHRGYWDLV 60 WNSGTPGTTG TFDEMRGREF EVMVQNEEQI ELSFKRNYSF KDKAVPLNID KRFIMLRNSS 120 GFYSYAIYEH MREWPPFNLP QTRIVFKLRK DKFHYMAIAD DRQRFMPLPE DRLRHRGKPL 180 DFPEAVLLVN PKEPEFKGEV DDKYQYSCEN KDLKVHGWIS MDPPVGFWQI TPSSEFRSGG 240 PLKQNLTSHV GPYALAMFLS AHYSGEDLVL KVSPDEPWKK VFGPVFFYLN SVSDGGDPLS 300 LWEDAKTQMS KEVQSWPYSF PASEDFPPPN QRGRLTGKLF VLDRYVNEEK MPATDAYVGL 360 AAPGDVGSWQ TEKKGYQFWT KTDADGSFSI EHVRIGDYNL YAWVPGFIGD YRYDVLINVS 420 SGSDMDVGDL VYEPPRNGPT LWEIGIPDRS AAEFYIPDPD PKYINKLYIN HPDRFRQYGL 480 WEKYAELHPD ADLVYSVGVS DYTKDWFFAH VNRKRNDGSH LATTWEIKFR LDNIIDKGVT 540 YILRVALATA NVAELQIQVN NPEAKPSLFT TGVIGHDNAI ARHGIHGLYR LYSVDILGSL 600 LVEGENTIFL SQIINNSSFN GIMYDYIRLE GPPPDLIPLN NS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 7.0e-5 | 380 | 427 | 48 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 2.0e-30 | 331 | 430 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-51 | 442 | 630 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 9.0e-71 | 14 | 301 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-96 | 7 | 200 | 195 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 6 | 633 | 6 | 645 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 633 | 1 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 1 | 634 | 1 | 633 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 6 | 633 | 6 | 634 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 633 | 1 | 635 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 352 | 1 | 346 | 0 |
DT552229 | 293 | 17 | 305 | 0 |
GW864372 | 311 | 144 | 454 | 0 |
DW479600 | 299 | 1 | 296 | 0 |
DW479599 | 295 | 1 | 292 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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