Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.312090.1 |
Family | PL4 |
Protein Properties | Length: 634 Molecular Weight: 72330.8 Isoelectric Point: 6.5144 |
Chromosome | Chromosome/Scaffold: 02995 Start: 1578184 End: 1584824 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 4 | 616 | 0 |
RAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGK FVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPALKGEVDDK YQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWE DAKIQMMAEVESWPYSFPASEDFPKKDQRGIVSGRLLVFDRYVDQDYLPACGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHVHTGEYNLYAW VPGFIGDYRCDALINVSQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVDHPDRFRQYGLWNRYAELYPNEDLVYTVGTSDYR KDWFFAHVPRKTNNSHEGTTWQIKFKLDRVDHKSMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNSIARHGIHGIYWVYSVGVAGCHLVEGE NTIFLTQPRCTSP |
Full Sequence |
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Protein Sequence Length: 634 Download |
MSSRAVRLQI RDHHVVVDNG ILQLTLSKPD GIITGVRYNG VDNLLEVLNP ESNRGYWDLV 60 WNSPGSKGVF DVIKGSRFRV IVENEEQVEL SFVRMWDPSL EGKFVPLNID KRFIVLRGSS 120 GFYSYAIYEH LKDWPDFDIG ETRITFKLRK DKFQYMAVAD NRQRVMPLPD DRLSGRCQTL 180 AYPEAVLLTN PKNPALKGEV DDKYQYSCEN NNLKVHGWIS TNPPTGFWQI TPSDEFRSGG 240 PLKQSLTSHV GPTTLAIFLS THYAGQDLVP KFRAGEPWKK VFGPVFLYLN STSVGDDPFW 300 LWEDAKIQMM AEVESWPYSF PASEDFPKKD QRGIVSGRLL VFDRYVDQDY LPACGAFVGL 360 SAPGEVGSWQ RECKGYQFWT RADDGGYFTI NHVHTGEYNL YAWVPGFIGD YRCDALINVS 420 QGSCIEMGDL VYEPPRDGPT LWEIGIPDRS ASEFYVPDPN PIHINKLFVD HPDRFRQYGL 480 WNRYAELYPN EDLVYTVGTS DYRKDWFFAH VPRKTNNSHE GTTWQIKFKL DRVDHKSMYT 540 LRVAIASATL AELQVRVNDP RSKRPLFTSG LIGRDNSIAR HGIHGIYWVY SVGVAGCHLV 600 EGENTIFLTQ PRCTSPFQGI MYDYIRLEGP PTK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 6.0e-30 | 331 | 430 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-52 | 442 | 628 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-74 | 14 | 293 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-102 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 632 | 1 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 632 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002306520.1 | 0 | 17 | 631 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 630 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 632 | 1 | 635 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 337 | 1 | 331 | 0 |
GW864372 | 311 | 144 | 454 | 0 |
DW479599 | 294 | 1 | 291 | 0 |
GO266963 | 263 | 1 | 263 | 0 |
DW479600 | 296 | 1 | 293 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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