y
Basic Information | |
---|---|
Species | Cucumis sativus |
Cazyme ID | Cucsa.319480.1 |
Family | CBM43 |
Protein Properties | Length: 476 Molecular Weight: 51768.2 Isoelectric Point: 6.8512 |
Chromosome | Chromosome/Scaffold: 03078 Start: 182458 End: 185454 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 366 | 445 | 2.6e-25 |
WCVANPFRDLTDVANHIKVACSVADCSTLNYGGSCNGIGAKGNISYAFNSYYQLQMQNEKSCEFDGLAMITFLDPSIGEC | |||
GH17 | 27 | 345 | 0 |
IGVNWGTISFHKLKPTTVVDLLKSNRIQKVKLFEADPSVLKALMGTGIQVMIGIPNEMLASLSSSLLASDLWVRHNLSSYVVKGGADIRYVAVGNEPFLS SYNGEYQSYIMPALLNLQQSLAKANLASYVKLVVPCNADAYESSLPSQGAFRPELIQIMTQLVSFLNSNGSPFVVNIYPFLSLYGNSDFPQDYAFFEGTT HAVTDGSNVYYNAFDGNYDTLVSALTKIGYGQMPIVIGEVGWPTDGAMGANLTAARVFNQGLINHVLGNKGTPLRPATPPVDVYLFSLLDEGAKSVLPGN FERHWGIFSFDGQAKYPLN |
Full Sequence |
---|
Protein Sequence Length: 476 Download |
MSFPRFQAAF LYLILLFGSS LVVESAIGVN WGTISFHKLK PTTVVDLLKS NRIQKVKLFE 60 ADPSVLKALM GTGIQVMIGI PNEMLASLSS SLLASDLWVR HNLSSYVVKG GADIRYVAVG 120 NEPFLSSYNG EYQSYIMPAL LNLQQSLAKA NLASYVKLVV PCNADAYESS LPSQGAFRPE 180 LIQIMTQLVS FLNSNGSPFV VNIYPFLSLY GNSDFPQDYA FFEGTTHAVT DGSNVYYNAF 240 DGNYDTLVSA LTKIGYGQMP IVIGEVGWPT DGAMGANLTA ARVFNQGLIN HVLGNKGTPL 300 RPATPPVDVY LFSLLDEGAK SVLPGNFERH WGIFSFDGQA KYPLNLGLGN KVLKNAKHVE 360 YLPSRWCVAN PFRDLTDVAN HIKVACSVAD CSTLNYGGSC NGIGAKGNIS YAFNSYYQLQ 420 MQNEKSCEFD GLAMITFLDP SIGECRFLVG VTDSRSLSSQ PSKNVPRCSI ESIKL* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0005 | 200 | 337 | 156 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 9.0e-17 | 365 | 434 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-29 | 366 | 447 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-73 | 27 | 343 | 319 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD65105.1 | 0 | 14 | 456 | 5 | 447 | glycosyl hydrolase family protein [Brassica oleracea] |
EMBL | CAB10499.1 | 0 | 11 | 473 | 36 | 491 | glucanase like protein [Arabidopsis thaliana] |
RefSeq | NP_193451.2 | 0 | 11 | 473 | 9 | 464 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002329964.1 | 0 | 11 | 456 | 13 | 458 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525026.1 | 0 | 6 | 456 | 4 | 455 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 27 | 346 | 1 | 306 | A Chain A, Crystal Structure Of A Response Regulator From Myxococcus Xanthus |
PDB | 1aq0_B | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 1.4013e-45 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 1.4013e-45 | 27 | 346 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |