| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.339820.1 |
| Family | GH28 |
| Protein Properties | Length: 478 Molecular Weight: 50514.3 Isoelectric Point: 6.4914 |
| Chromosome | Chromosome/Scaffold: 03356 Start: 2365337 End: 2368746 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 110 | 440 | 0 |
| SACNVEGSVVEVPSGSEFLVGPISFSGPNCQPNIMFQLDGKIIAPTSPSAWGSGMLQWIEFTKLKGITVKGTGTIDGQGSVWWNDSPTDNPTDKNLDKES SGGELPSTKPTALRFYGSDEVTVSGITIQNSQKAHLKFDSCTAVQVSSLTISSPGDSPNTDGIHLQNSQNVIISNSNIACGDDCISIQTGSSGVYIHNVN CGPGHGISIGGLGRDDTKACVSNVTVRDVKLQNTMNGVRIKTWQGGSGLVQGILFSNIQVTDVQTPIMIDQYYCDGGRCHNGSSAVAISGVNYVNIRGTY TSTPVHFACSDSLPCTGVTLDTIQLEGSSGS | |||
| Full Sequence |
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| Protein Sequence Length: 478 Download |
| MEMGRKNLKC LTTIAFICVF VCSFSFHCCH ARKTVDYRHW QVHRHHQGSG RSLRLTGSGH 60 VGSEGVVGTS LASKGRATNG GSGNFNVLDF GAKGDGETDD TKAFQSAWES ACNVEGSVVE 120 VPSGSEFLVG PISFSGPNCQ PNIMFQLDGK IIAPTSPSAW GSGMLQWIEF TKLKGITVKG 180 TGTIDGQGSV WWNDSPTDNP TDKNLDKESS GGELPSTKPT ALRFYGSDEV TVSGITIQNS 240 QKAHLKFDSC TAVQVSSLTI SSPGDSPNTD GIHLQNSQNV IISNSNIACG DDCISIQTGS 300 SGVYIHNVNC GPGHGISIGG LGRDDTKACV SNVTVRDVKL QNTMNGVRIK TWQGGSGLVQ 360 GILFSNIQVT DVQTPIMIDQ YYCDGGRCHN GSSAVAISGV NYVNIRGTYT STPVHFACSD 420 SLPCTGVTLD TIQLEGSSGS NEPFCWKAYG ELKTSTVPPV DCLQSGNPFK AQAHDSC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-69 | 84 | 439 | 361 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-70 | 127 | 437 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-71 | 72 | 439 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-74 | 71 | 440 | 375 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-95 | 85 | 476 | 397 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD46483.1 | 0 | 85 | 470 | 46 | 432 | polygalacturonase PG1 [Glycine max] |
| GenBank | AAD46484.1 | 0 | 85 | 471 | 42 | 429 | polygalacturonase PG2 [Glycine max] |
| GenBank | ACU24545.1 | 0 | 85 | 470 | 46 | 432 | unknown [Glycine max] |
| DDBJ | BAH56488.1 | 0 | 8 | 477 | 7 | 510 | polygalacturonase 1 [Prunus persica] |
| RefSeq | XP_002521450.1 | 0 | 23 | 470 | 22 | 460 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-25 | 178 | 382 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 6e-24 | 176 | 442 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-24 | 176 | 442 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-24 | 176 | 442 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-24 | 176 | 442 | 72 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES800057 | 341 | 127 | 446 | 0 |
| GO844129 | 333 | 92 | 424 | 0 |
| JG471675 | 242 | 1 | 242 | 0 |
| EC934902 | 255 | 230 | 478 | 0 |
| EC926825 | 254 | 231 | 478 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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