Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.340580.1 |
Family | CBM43 |
Protein Properties | Length: 480 Molecular Weight: 52069.9 Isoelectric Point: 4.8669 |
Chromosome | Chromosome/Scaffold: 03356 Start: 2966286 End: 2969475 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 367 | 448 | 1e-24 |
WCMFNPNAKDLSKLADNIDYACTFSDCTSLGYGSSCNNLDANGNASYAFNMYFQVQNQDELACNFQGLATVTSQNLSQGTCN | |||
GH17 | 23 | 344 | 0 |
LGVNWGTMANHRLPPKTVVQMFKDNGIQKVKLFDADQSSMGALAGTGIEVMVAIPNDQLSAMGDYNRAKQWVQRNVTRYTFDGGVTIKYVAVGNEPFLSS YNGSFLNVTFPALLNIQNALNEAGHGDSIKATVPLNADVYNSPVNSPYPSAGRFRNDINQLMTDIVQFLNKNKAPFTVNIYPFLSLYGNDNFPFDYAFFD GASNPVVDIGTGIQYTNVFDANFDTLVSSLKAVGLGDMPILVGEVGWPTDGDKNGNVGNAYRFYNGLLPRLAANKGTPLRPGFIEVYLFSFLDENGKSIA PGNFERHWGIFGYDGQPKFGMD |
Full Sequence |
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Protein Sequence Length: 480 Download |
MGSLGFLKWV LLVGVLGSCV EGLGVNWGTM ANHRLPPKTV VQMFKDNGIQ KVKLFDADQS 60 SMGALAGTGI EVMVAIPNDQ LSAMGDYNRA KQWVQRNVTR YTFDGGVTIK YVAVGNEPFL 120 SSYNGSFLNV TFPALLNIQN ALNEAGHGDS IKATVPLNAD VYNSPVNSPY PSAGRFRNDI 180 NQLMTDIVQF LNKNKAPFTV NIYPFLSLYG NDNFPFDYAF FDGASNPVVD IGTGIQYTNV 240 FDANFDTLVS SLKAVGLGDM PILVGEVGWP TDGDKNGNVG NAYRFYNGLL PRLAANKGTP 300 LRPGFIEVYL FSFLDENGKS IAPGNFERHW GIFGYDGQPK FGMDLSGQGQ NKLLVGAQNV 360 QYLPQKWCMF NPNAKDLSKL ADNIDYACTF SDCTSLGYGS SCNNLDANGN ASYAFNMYFQ 420 VQNQDELACN FQGLATVTSQ NLSQGTCNFI IQLASSPPSH AASFVSLASM ILLFIALLL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-5 | 252 | 336 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-17 | 366 | 436 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-31 | 366 | 449 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-74 | 23 | 344 | 325 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ90287.1 | 0 | 20 | 477 | 25 | 480 | beta-1,3-glucanase, acidic [Coffea arabica] |
RefSeq | XP_002277003.1 | 0 | 4 | 453 | 5 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319699.1 | 0 | 1 | 477 | 1 | 478 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002325410.1 | 0 | 1 | 455 | 1 | 483 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525445.1 | 0 | 1 | 459 | 1 | 459 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Hp-Nap From Strain Ys39 In Apo Form |
PDB | 3f55_C | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Hp-Nap From Strain Ys39 In Apo Form |
PDB | 3f55_B | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Hp-Nap From Strain Ys39 In Apo Form |
PDB | 3f55_A | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Hp-Nap From Strain Ys39 In Apo Form |
PDB | 3em5_D | 0 | 23 | 346 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |