| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.350930.1 |
| Family | GH28 |
| Protein Properties | Length: 289 Molecular Weight: 31392.2 Isoelectric Point: 8.4093 |
| Chromosome | Chromosome/Scaffold: 03504 Start: 347512 End: 349365 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 161 | 268 | 1e-26 |
| NPIRLSSPNAGIATDMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKINNVSFKNIRGSSATPVAVKLICSSNQPCEEVKVANIDLVYNGINGPIT SQCMNVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 289 Download |
| MGVIKYSNLL VTTFLMSLLS FIIESRSHVD VIFPLRKYGN IVSGADVTEA LKDAWNDACA 60 SVRPSAVVIP KGIFKVREGE FKGPCKSPIE IRVRGTLQAP KHPHGDSWIT FAYVDRMTLS 120 GGGVFDGQGK AGWEKNDCHK RIDCANLPIV SSIPFVFLSI NPIRLSSPNA GIATDMHFSD 180 ITMVNVSNPI LIDQEYCPWN QCNREIPSNI KINNVSFKNI RGSSATPVAV KLICSSNQPC 240 EEVKVANIDL VYNGINGPIT SQCMNVKPIV SGIQNPSICS SSYTTASK* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-16 | 59 | 185 | 135 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 8.0e-22 | 159 | 279 | 124 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-22 | 4 | 156 | 161 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-26 | 170 | 267 | 98 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-31 | 161 | 279 | 123 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 5e-31 | 25 | 164 | 23 | 160 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89476.1 | 2e-40 | 161 | 279 | 272 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 3e-40 | 159 | 279 | 270 | 393 | polygalacturonase [Salix gilgiana] |
| EMBL | CBI22049.1 | 0 | 30 | 285 | 25 | 339 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002329173.1 | 8.00001e-41 | 170 | 279 | 44 | 153 | predicted protein [Populus trichocarpa] |
| Signal Peptide | ||||
|---|---|---|---|---|
| Cleavage Site | ||||
| 27 | ||||
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CO111175 | 116 | 171 | 286 | 8.00001e-41 |
| GO547568 | 117 | 166 | 282 | 8.00001e-41 |
| CU533490 | 111 | 171 | 281 | 9.99995e-41 |
| CO109692 | 131 | 159 | 286 | 9.99995e-41 |
| CU615984 | 111 | 171 | 281 | 2e-39 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |