| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.353160.4 |
| Family | CBM22 |
| Protein Properties | Length: 944 Molecular Weight: 105126 Isoelectric Point: 6.1649 |
| Chromosome | Chromosome/Scaffold: 03533 Start: 785065 End: 791118 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 232 | 368 | 1.7e-29 |
| NISLNPRFDDDLKNWSGRGCKIALHDSMGNGKVLPQSGKFFASAMERLQSWNGIQQEITGRVQRKVAYDVAAVVRVFGNNITSTDVRATLWVQTPNSREQ YIGIANVQATDKDWVQLQGKFLLNASPSKVVIYIEGP | |||
| CBM22 | 62 | 200 | 1.6e-30 |
| NILLNHDFSMGLQHWHPNCCNGYINLAESNNRDEAFINTCAKYAVVTDRNEGWHGLEQEITNNISPGTTYSVSASVGVSGSLQGSVDVLATLKLVYKDST TNYLCIGRTSVLKEKWEKLEGTFSLSTMPDRVVFYLEGP | |||
| CBM22 | 403 | 544 | 3.80032e-42 |
| NIIMNNNLSNGTKGWFPLGSCTLSVGTGSPHIVPPMARDPLGPSQPLSGRYILATNRTETWMGPAQMITDKVKPFHTYQVSAWVKIGSRATGAQIVNVAV GVDDQWVNGGQVEISNDRWHEIGGSFRIEKQAEKIIVYVQGP | |||
| GH10 | 599 | 868 | 0 |
| QMQNSFPFGTCISRTNIDNEDFVNFFVKNFNWAVFGNELKWYWTEPQQGNFNYRDADELLDFCKSHNIETRGHCIFWEVQDTVQQWIQSLNKNDMMAAVH NRLTGLLTRYKGKFKHYDVNNEMLHGSFYQDHLGKDIRADMFKHANKLDPSALLFVNDYHVEDGCDGRSSPEKYVDQILQLQEQGAPVGGVGIQGHIDCP VGPIVCSALDKIGILGLPIWFTELDVSSINEHVRADDLEVMLREAYAHPAVEGIMLWGFWEMFMCRDNSH | |||
| Full Sequence |
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| Protein Sequence Length: 944 Download |
| MRRACTCCFT SRPPNINPQN SDCDKPSQSS VVTMTSTQEN NASGVPEGME ESLTKLSPRA 60 ANILLNHDFS MGLQHWHPNC CNGYINLAES NNRDEAFINT CAKYAVVTDR NEGWHGLEQE 120 ITNNISPGTT YSVSASVGVS GSLQGSVDVL ATLKLVYKDS TTNYLCIGRT SVLKEKWEKL 180 EGTFSLSTMP DRVVFYLEGP SPGIDLLIQS VEITCACPNE LETGIANAGD ENISLNPRFD 240 DDLKNWSGRG CKIALHDSMG NGKVLPQSGK FFASAMERLQ SWNGIQQEIT GRVQRKVAYD 300 VAAVVRVFGN NITSTDVRAT LWVQTPNSRE QYIGIANVQA TDKDWVQLQG KFLLNASPSK 360 VVIYIEGPPS GVDILIDSFV VKQAQKISSS PPPRAENLAY GFNIIMNNNL SNGTKGWFPL 420 GSCTLSVGTG SPHIVPPMAR DPLGPSQPLS GRYILATNRT ETWMGPAQMI TDKVKPFHTY 480 QVSAWVKIGS RATGAQIVNV AVGVDDQWVN GGQVEISNDR WHEIGGSFRI EKQAEKIIVY 540 VQGPAPSVDL MVAGLQVFPV DRRARLRYLR TQTDKIRKRD ITLKFLGSCS GGIFVKVRQM 600 QNSFPFGTCI SRTNIDNEDF VNFFVKNFNW AVFGNELKWY WTEPQQGNFN YRDADELLDF 660 CKSHNIETRG HCIFWEVQDT VQQWIQSLNK NDMMAAVHNR LTGLLTRYKG KFKHYDVNNE 720 MLHGSFYQDH LGKDIRADMF KHANKLDPSA LLFVNDYHVE DGCDGRSSPE KYVDQILQLQ 780 EQGAPVGGVG IQGHIDCPVG PIVCSALDKI GILGLPIWFT ELDVSSINEH VRADDLEVML 840 REAYAHPAVE GIMLWGFWEM FMCRDNSHLV NAEGEINEAG KRYLALKQEW LSHASGQIDE 900 RSEFRFRGFQ GTYEVQIVNG SKKTSKTFIV EKGDTPVEIS IDL* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 8.0e-15 | 61 | 202 | 145 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 1.0e-18 | 403 | 547 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 6.0e-37 | 575 | 857 | 311 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 5.0e-77 | 637 | 882 | 267 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-79 | 602 | 859 | 275 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 34 | 943 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002283550.1 | 0 | 1 | 943 | 1 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301133.1 | 0 | 60 | 943 | 162 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 62 | 564 | 2 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 231 | 552 | 1 | 309 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 6e-31 | 607 | 861 | 40 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 6e-31 | 607 | 861 | 40 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 6e-29 | 606 | 856 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 6e-29 | 606 | 856 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 1e-28 | 606 | 856 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 430 | 724 | 0 |
| EX570690 | 295 | 650 | 944 | 0 |
| GO850973 | 328 | 528 | 852 | 0 |
| EB442796 | 120 | 257 | 376 | 0.000006 |
| EB442796 | 113 | 101 | 213 | 0.004 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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