| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.353160.8 |
| Family | CBM22 |
| Protein Properties | Length: 686 Molecular Weight: 76981.5 Isoelectric Point: 6.9485 |
| Chromosome | Chromosome/Scaffold: 03533 Start: 785065 End: 788205 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 9 | 110 | 5.9e-25 |
| QSGKFFASAMERLQSWNGIQQEITGRVQRKVAYDVAAVVRVFGNNITSTDVRATLWVQTPNSREQYIGIANVQATDKDWVQLQGKFLLNASPSKVVIYIE GP | |||
| CBM22 | 145 | 286 | 1.69978e-42 |
| NIIMNNNLSNGTKGWFPLGSCTLSVGTGSPHIVPPMARDPLGPSQPLSGRYILATNRTETWMGPAQMITDKVKPFHTYQVSAWVKIGSRATGAQIVNVAV GVDDQWVNGGQVEISNDRWHEIGGSFRIEKQAEKIIVYVQGP | |||
| GH10 | 341 | 611 | 0 |
| QMQNSFPFGTCISRTNIDNEDFVNFFVKNFNWAVFGNELKWYWTEPQQGNFNYRDADELLDFCKSHNIETRGHCIFWEVQDTVQQWIQSLNKNDMMAAVH NRLTGLLTRYKGKFKHYDVNNEMLHGSFYQDHLGKDIRADMFKHANKLDPSALLFVNDYHVEDGCDGRSSPEKYVDQILQLQEQGAPVGGVGIQGHIDCP VGPIVCSALDKIGILGLPIWFTELDVSSINEHVRADDLEVMLREAYAHPAVEGIMLWGFWEMFMCRDNSHL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 686 Download |
| MGNGKVLPQS GKFFASAMER LQSWNGIQQE ITGRVQRKVA YDVAAVVRVF GNNITSTDVR 60 ATLWVQTPNS REQYIGIANV QATDKDWVQL QGKFLLNASP SKVVIYIEGP PSGVDILIDS 120 FVVKQAQKIS SSPPPRAENL AYGFNIIMNN NLSNGTKGWF PLGSCTLSVG TGSPHIVPPM 180 ARDPLGPSQP LSGRYILATN RTETWMGPAQ MITDKVKPFH TYQVSAWVKI GSRATGAQIV 240 NVAVGVDDQW VNGGQVEISN DRWHEIGGSF RIEKQAEKII VYVQGPAPSV DLMVAGLQVF 300 PVDRRARLRY LRTQTDKIRK RDITLKFLGS CSGGIFVKVR QMQNSFPFGT CISRTNIDNE 360 DFVNFFVKNF NWAVFGNELK WYWTEPQQGN FNYRDADELL DFCKSHNIET RGHCIFWEVQ 420 DTVQQWIQSL NKNDMMAAVH NRLTGLLTRY KGKFKHYDVN NEMLHGSFYQ DHLGKDIRAD 480 MFKHANKLDP SALLFVNDYH VEDGCDGRSS PEKYVDQILQ LQEQGAPVGG VGIQGHIDCP 540 VGPIVCSALD KIGILGLPIW FTELDVSSIN EHVRADDLEV MLREAYAHPA VEGIMLWGFW 600 EMFMCRDNSH LVNAEGEINE AGKRYLALKQ EWLSHASGQI DERSEFRFRG FQGTYEVQIV 660 NGSKKTSKTF IVEKGDTPVE ISIDL* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 6.0e-11 | 10 | 112 | 103 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 1.0e-18 | 145 | 289 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-37 | 317 | 599 | 311 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 9.0e-78 | 379 | 624 | 267 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 8.0e-80 | 344 | 601 | 275 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 1 | 685 | 228 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002301133.1 | 0 | 1 | 294 | 29 | 309 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 1 | 685 | 362 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 2e-28 | 9 | 306 | 200 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0.0000003 | 145 | 299 | 2 | 150 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 2e-31 | 349 | 603 | 40 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 2e-31 | 349 | 603 | 40 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 2e-29 | 348 | 598 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 2e-29 | 348 | 598 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 4e-29 | 348 | 598 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 172 | 466 | 0 |
| EX570690 | 295 | 392 | 686 | 0 |
| GO850973 | 328 | 270 | 594 | 0 |
| EB442796 | 111 | 8 | 118 | 0.000008 |
| GO850973 | 25 | 94 | 118 | 5.2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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