| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.356350.1 |
| Family | GH28 |
| Protein Properties | Length: 251 Molecular Weight: 27367.9 Isoelectric Point: 7.0838 |
| Chromosome | Chromosome/Scaffold: 03577 Start: 1118334 End: 1120109 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 58 | 250 | 0 |
| AVACKSEESTIVYIPKGRFLVQPMEFHGGGCHNEDISFHIDGALIGPPDYRILGNVESWLSFVEVNGVSLTGGVLDANGEALWSCKFSTTHCPVGARTLS FRDSKNIRIRGLVSRNSQLFHIVINGCKNVLVEEVNVIAASNSPNTDGIHVETSTHVTIIDSIIQTGDDCISIGPGSYNLWIQRIRCGPGHGI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 251 Download |
| MAKISNHSSF QPTFILLALV LLISHTIRRS HSANLLDILD FGAIRGYDSS QAIRRAWAVA 60 CKSEESTIVY IPKGRFLVQP MEFHGGGCHN EDISFHIDGA LIGPPDYRIL GNVESWLSFV 120 EVNGVSLTGG VLDANGEALW SCKFSTTHCP VGARTLSFRD SKNIRIRGLV SRNSQLFHIV 180 INGCKNVLVE EVNVIAASNS PNTDGIHVET STHVTIIDSI IQTGDDCISI GPGSYNLWIQ 240 RIRCGPGHGI X 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-41 | 40 | 250 | 221 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 2.0e-41 | 37 | 250 | 222 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 4.0e-42 | 4 | 250 | 256 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-46 | 14 | 250 | 247 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-65 | 30 | 250 | 223 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC28947.1 | 0 | 35 | 250 | 29 | 245 | polygalacturonase [Solanum lycopersicum] |
| RefSeq | XP_002315106.1 | 0 | 15 | 250 | 11 | 248 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 17 | 250 | 4 | 238 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 11 | 250 | 6 | 244 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 12 | 250 | 4 | 243 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.00009 | 36 | 233 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00009 | 36 | 233 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00009 | 36 | 233 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00009 | 36 | 233 | 28 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1rmg_A | 0.0003 | 37 | 244 | 22 | 216 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
