| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.357430.1 |
| Family | GH28 |
| Protein Properties | Length: 411 Molecular Weight: 44063.1 Isoelectric Point: 8.0777 |
| Chromosome | Chromosome/Scaffold: 03578 Start: 458506 End: 461196 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 96 | 396 | 0 |
| ACRNTVGPAKFLIPQRTFLVGPVTFAGPCKSFPITLENQGTVKATIDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQILPISIK FTRLNHTIVDGLTSINSMGFHTSVFYCYNFTATNMKIIAPHNSPNTDGMHLSTSKLVTIANSVIGTGDDCVSIGHSTENITVTNVTCGPGHGLSVGSLGK YSKEKGVYDVLVKNCTIFNATNGARIKTWASPISGRDESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGINLRNTTIVSSCSNA K | |||
| Full Sequence |
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| Protein Sequence Length: 411 Download |
| FAWQCCAVIF DDVTGTKNLL KGIVPTANEQ FLRPAEAPRR LGFSTLSNNG RTVNDIKASV 60 DLNENGGSVF DVTKHGAKAD GKTDDAQAFM TTWIAACRNT VGPAKFLIPQ RTFLVGPVTF 120 AGPCKSFPIT LENQGTVKAT IDISAYSSPE WFSIEDITGF ILTGSGVFDG QGLSVWPYND 180 CKKNNLCQIL PISIKFTRLN HTIVDGLTSI NSMGFHTSVF YCYNFTATNM KIIAPHNSPN 240 TDGMHLSTSK LVTIANSVIG TGDDCVSIGH STENITVTNV TCGPGHGLSV GSLGKYSKEK 300 GVYDVLVKNC TIFNATNGAR IKTWASPISG RDESNWKVSN VQFKNIRGTS TTNVAVLLEC 360 SKLFPCEGVE LRDINLSYGG INLRNTTIVS SCSNAKIATF GVQNPPPCVV * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-64 | 67 | 377 | 348 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-66 | 60 | 409 | 384 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-70 | 69 | 408 | 379 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-83 | 97 | 397 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-112 | 58 | 408 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 66 | 401 | 52 | 418 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36886.1 | 0 | 35 | 408 | 9 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268540.1 | 0 | 35 | 408 | 9 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 66 | 408 | 52 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 53 | 408 | 29 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000006 | 164 | 323 | 115 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000001 | 144 | 359 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000001 | 144 | 359 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000001 | 144 | 359 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000001 | 144 | 359 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE107069 | 248 | 78 | 324 | 0 |
| DT736437 | 255 | 70 | 324 | 0 |
| GR452825 | 267 | 68 | 332 | 0 |
| GR452105 | 261 | 74 | 332 | 0 |
| EC987202 | 267 | 65 | 330 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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