Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.378940.1 |
Family | CE8 |
Protein Properties | Length: 410 Molecular Weight: 45063.8 Isoelectric Point: 5.0772 |
Chromosome | Chromosome/Scaffold: 03810 Start: 388958 End: 391427 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 102 | 392 | 0 |
LTVDLKGCANFSSVQTAVDAVPDYGSSRTLILIDSGIYREKVVIEANKTNLIIEGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFIAYNISFKNTAP EATPGTVGGQAVAVRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYDGCRIKSIAKEVLGGGVSGAITAHGRQTRSEETGFA FINCTISGSGKVWLGRAWGACATVVFSKTYMTDVVAVDGWNDWRDPSRDQSVLFGEYECFGDGANYRLRVPYSKQLNQVEAQHYLDVSYVD |
Full Sequence |
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Protein Sequence Length: 410 Download |
MRIKTNFFWF YTLLIVALFI TIVLRSFPLP LTAIIATVGP HDTAFELGVF SSIVKGSGLD 60 EILSLVTQYL SKTQYQWRDE KSCDEKKWDS KLISLYNVSL TLTVDLKGCA NFSSVQTAVD 120 AVPDYGSSRT LILIDSGIYR EKVVIEANKT NLIIEGQGYL NTAIEWNDTA NSTGGTTYSS 180 SVTIFASNFI AYNISFKNTA PEATPGTVGG QAVAVRIAGD EAAFYGCGFY GAQDTLYDDK 240 GRHYFKECFI QGSIDFIFGN ARSLYDGCRI KSIAKEVLGG GVSGAITAHG RQTRSEETGF 300 AFINCTISGS GKVWLGRAWG ACATVVFSKT YMTDVVAVDG WNDWRDPSRD QSVLFGEYEC 360 FGDGANYRLR VPYSKQLNQV EAQHYLDVSY VDGNQWLINQ QINSTLSTI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 6.0e-93 | 99 | 397 | 299 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-96 | 101 | 398 | 299 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 3.0e-99 | 100 | 397 | 305 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-118 | 98 | 399 | 309 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 6.0e-148 | 97 | 397 | 303 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30191.1 | 0 | 45 | 398 | 40 | 400 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_181209.1 | 0 | 81 | 402 | 72 | 390 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264941.1 | 0 | 102 | 398 | 15 | 310 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326223.1 | 0 | 87 | 407 | 3 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519425.1 | 0 | 44 | 401 | 42 | 371 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 7e-40 | 98 | 397 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-32 | 108 | 397 | 11 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-18 | 112 | 385 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-18 | 112 | 385 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-18 | 112 | 385 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |