| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.388450.1 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 49324 Isoelectric Point: 4.6045 |
| Chromosome | Chromosome/Scaffold: 03967 Start: 855377 End: 857701 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 115 | 444 | 0 |
| ACRNTVGPVKILIPKGTYLVGPMTLAGPCKSFPITIENQGIVKATTDLSEYSSPEWFSIEDITGFILTGSGVFDGQGTAVWAYNDCKSNKDCQLLPISIK FSGLNHTIVDGITSLNSKGFHMSLFNCYNFTITNVNIIAPDESPNTDGIHLSTSELVNIMNSIIGTGDDCVSIGHSTVKITVTNVTCGPGHGLSVGSLGK YSREKDVYDVLVKNCTIFNATNGARIKTFASPISGLASGIIFEDIIMYNVKYPIIIDQTYSTDENKESKWKVSDVHFKNIRGTSATNVGVLLECSKLLPC EGVVLKDINLTYGGTDSKNTTIVSSCLNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MTISRILSLF QILLLVFAWQ CYDKVAAIIT DDIANLNNEI ISTINQQLIP SPTATPGPLG 60 METLPDLDDT VNDSNNTNND LNENGESVFD VTKHGAKADG KTDDAQAFET TWIAACRNTV 120 GPVKILIPKG TYLVGPMTLA GPCKSFPITI ENQGIVKATT DLSEYSSPEW FSIEDITGFI 180 LTGSGVFDGQ GTAVWAYNDC KSNKDCQLLP ISIKFSGLNH TIVDGITSLN SKGFHMSLFN 240 CYNFTITNVN IIAPDESPNT DGIHLSTSEL VNIMNSIIGT GDDCVSIGHS TVKITVTNVT 300 CGPGHGLSVG SLGKYSREKD VYDVLVKNCT IFNATNGARI KTFASPISGL ASGIIFEDII 360 MYNVKYPIII DQTYSTDENK ESKWKVSDVH FKNIRGTSAT NVGVLLECSK LLPCEGVVLK 420 DINLTYGGTD SKNTTIVSSC LNAKITTFGV QNPPPCVV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-79 | 91 | 437 | 356 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 4.0e-80 | 88 | 457 | 375 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 4.0e-83 | 88 | 456 | 380 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-99 | 116 | 440 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-137 | 89 | 456 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI36886.1 | 0 | 81 | 457 | 37 | 415 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268540.1 | 0 | 81 | 457 | 37 | 411 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 85 | 456 | 52 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002279959.1 | 0 | 88 | 457 | 52 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 87 | 456 | 44 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-20 | 183 | 429 | 115 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000000000003 | 187 | 374 | 80 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000003 | 187 | 374 | 80 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000003 | 187 | 374 | 80 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000000003 | 187 | 374 | 80 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
